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[bioontology-support] ODIE Support
maziz at tgen.org
maziz at tgen.org
Mon Apr 6 23:18:20 PDT 2009
Hi
I downloaded the ODIE demo version from
http://bioontology.org/tools/ODIE.html website and ran it.
The issue is the next buttons donot work and i cannot load any ontologies.
Can you please look into this issue.
Thanks
Meraj Aziz
-----Original Message-----
From: Chavan, Girish [mailto:chavang at upmc.edu]
Sent: Mon 3/2/2009 10:25 AM
To: Meraj Aziz
Subject: RE: ODIE Support
Im sorry, looks like the change did not get saved in the installer.
I would suggest doing the following on your end.
Edit the file <odieinstallation>/sql/odiedb.sql
Replace the following line:
KEY `FK_odie_annotation_2` (`analysis_document_id`) USING BTREE,
With this:
KEY `FK_odie_annotation_2` USING BTREE (`analysis_document_id`),
Then run the batch files found in <odieinstallation>/scripts directory
in this order:
Initdb.bat
Ncit.bat
Radlex.bat
Fma.bat
-Girish
From: maziz at tgen.org [mailto:maziz at tgen.org]
Sent: Monday, March 02, 2009 12:20 PM
To: Chavan, Girish
Subject: RE: ODIE Support
Hi Girish
I get the same error shown below:
------------------------------------------------------------------------
------------------------------------------------------------------------
--------------------------------------
Creating ODIE database...
Creating ODIE tables...
ERROR 1064 (42000) at line 367: You have an error in your SQL syntax;
check the manual that corresponds to your MySQL server version for the
right syntax to use near 'USING BTREE,
CONSTRAINT `FK_odie_annotation_1` FOREIGN KEY (`analysis_document' at
line 9
meraj
From: Chavan, Girish [mailto:chavang at upmc.edu]
Sent: Monday, March 02, 2009 9:34 AM
To: Meraj Aziz
Subject: RE: ODIE Support
Meraj,
It was a bug in MySQL that was the problem. I have updated the
installer. Please download and try again
http://caties.cabig.upmc.edu/ODIE/odieinstaller.exe
thanks
-Girish
From: maziz at tgen.org [mailto:maziz at tgen.org]
Sent: Thursday, February 26, 2009 5:06 PM
To: Chavan, Girish
Subject: RE: ODIE Support
Hi,
MySQL v5.0.45-community-nt
And Mysql Client version 5.1.11
Thanks for responding.
meraj
From: Chavan, Girish [mailto:chavang at upmc.edu]
Sent: Thursday, February 26, 2009 2:00 PM
To: Meraj Aziz
Subject: ODIE Support
Dear Mr. Aziz.
This is regarding your message to bioontology-support that was forwarded
to me.
What version of MySQL are you using? ODIE requires MySQL v5.x+
Thanks,
-Girish Chavan
ODIE Development Team
From: <maziz at tgen.org>
Date: February 2, 2009 1:01:07 PM PST
To: <support at bioontology.org>
Subject: [bioontology-support] Error while installing
Hi,
I am trying to install the ODIE toolkit software but it gives me the
following error.
Can anyone help me regarding the issue.
Thanks
Meraj Aziz
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