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[bioontology-support] UMLS REST Service Access Request

Trish Whetzel whetzel at stanford.edu
Wed Aug 26 18:19:58 PDT 2009


Hi Kevin, 

 

We have recently loaded UMLS ontologies into BioPortal. Would accessing the terms from BioPortal and it’s associated web services (http://www.bioontology.org/wiki/index.php/NCBO_REST_services) provide the access to the terms, structure, content that you are interested in?

 

Trish

 

 

From: bioontology-support-bounces at lists.stanford.edu [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of Mitchell, Kevin
Sent: Wednesday, August 26, 2009 2:21 PM
To: 'support at bioontology.org'
Subject: [bioontology-support] UMLS REST Service Access Request

 

I’ve been experiencing some problems accessing the service.

 

It seems like the “root” concept of many sources is not connected to the remaining concepts in that source.

 

For instance,

 

http://ncbolabs-nk2.stanford.edu:8080/umls/ICD9CM

 

works returning 

 

<concept>

−

<term>

<cui>C1137112</cui>

−

<str>

The International Classification of Diseases: 9th revision, Clinical Modification

</str>

<lui>L1221786</lui>

<sui>S1465036</sui>

<aui>A1415692</aui>

<saui/>

<scui/>

<sab>ICD9CM</sab>

<ispref>Y</ispref>

</term>

</concept>

 

But 

 

http://ncbolabs-nk2.stanford.edu:8080/umls/ICD9CM/C1137112

 

fails as does /children of this url?

 

How can I traverse through these sources that don’t appear to be linked?  

 

It should be noted that linkage is working fine for some sources like NCI, and SNOMEDCT but

the majority fail with this issue.

 

Thanks,

 

Kevin Mitchell (University of Pittsburgh NCBO ODIE project)

 

 

 

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