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[bioontology-support] Software Ontology
noy at stanford.edu
Thu Dec 3 10:16:42 PST 2009
We store mappings separate from the ontologies, so having those
mappings won't prevent software ontology or EFO from standing on their
own. If you could provide us with a CSV file, or some other file with
the mappings, we can upload them after uploading the ontology.
On Dec 3, 2009, at 10:01 AM, James Malone wrote:
> Hi Trish,
> Great thanks! We're uploading it in a separate subfolder on the EFO
> SourceForge site here http://efo.svn.sourceforge.net/viewvc/efo/trunk/src/softwareontologyinowl/InferredSWOOWLview/SWO_inferred.owl
> (that is the head link to the most recent file)
> I can generate the mappings between EFO classes, IAO classes and the
> SWO classes - actually in several cases we use the mappings straight
> from IAO and EFO so no mapping is required. I would rather have
> this as sep from EFO I think so that people can use it in isolation
> (like OBI) if they choose. We're a bit short on docs at the moment
> but I can get some written up soon! Just wanted to get this Beta
> version out for public inspection as we've had some requests for it.
> Trish Whetzel wrote:
>> Hi James,
>> Very much interested to see the Software Ontology. Has the location
>> of this ontology been included in your SVN repository file for the
>> automatic pull?
>> ***Misha, can you confirm if anything additional to the repository
>> file is needed to include this ontology in the automatic pull?
>> James, do you have mappings generated for the Software Ontology?
>> Also, would it make sense to load this as a 'view' of EFO - is this
>> a subset of EFO or does this extend from the software class in EFO?
>> I can talk to via Skype about views further if you like.
>> On Dec 3, 2009, at 9:17 AM, James Malone wrote:
>>> We have had a project working on creating a software ontology that
>>> we needed for a branch of EFO. We've kept it separate though so it
>>> can be reused as separate ontology. I'd like to get this Software
>>> Ontology uploaded to BioPortal if possible please! I've uploaded
>>> to our public SVN, but can you let me know what details you
>>> require for me to get it uploaded to BioPortal. I guess you might
>>> need some extra bits like a description etc.
>>> Many thanks in advance!
>>> European Bioinformatics Institute, Wellcome Trust Genome Campus,
>>> Hinxton, Cambridge, CB10 1SD, United Kingdom
>>> Tel: + 44 (0) 1223 494 676
>>> Fax: + 44 (0) 1223 492 468
>>> bioontology-support mailing list
>>> bioontology-support at lists.stanford.edu
> European Bioinformatics Institute, Wellcome Trust Genome Campus,
> Hinxton, Cambridge, CB10 1SD, United Kingdom
> Tel: + 44 (0) 1223 494 676
> Fax: + 44 (0) 1223 492 468
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
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