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[bioontology-support] Software Ontology (SVN pull)

Michael Dorf mdorf at stanford.edu
Wed Dec 16 10:46:45 PST 2009


Hi James,

 

Sorry to continue confusing things, but since both ontologies (EFO and
SWO) are residing within the same repository branch, there is no need for
a separate descriptor file.  It CAN work, of course, but a cleaner
alternative would be to have a single metadata descriptor for both
ontologies.  I've attached a file that lists both ontologies. You can
simply copy it into some location within the branch (perhaps in some
neutral location, like: "/efo/trunk/src/metadata/EFO_ontologies.txt", but
this is entirely up to you).

 

If this works for you, copy the file into the repository and send us back
the path information.

 

Thanks,

 

Misha

 

 

From: Trish Whetzel [mailto:whetzel at stanford.edu] 
Sent: Tuesday, December 15, 2009 2:12 PM
To: Michael Dorf
Subject: Fwd: [bioontology-support] Software Ontology (SVN pull)

 

Info on the EFO ontology. 

 

Begin forwarded message:





From: James Malone <malone at ebi.ac.uk>

Date: December 15, 2009 7:16:05 AM PST

To: Trish Whetzel <whetzel at stanford.edu>

Subject: Re: [bioontology-support] Software Ontology (SVN pull)

 

Hi Trish,

I've checked in a similar file for EFO now.

Details for EFO, again anonymous checkout is enabled:

https://efo.svn.sourceforge.net/svnroot/efo/trunk/src/efoinowl/InferredEFO
OWLview/EFO_Bioportal/EFO_Bioportal_details.txt
The EFO OWL file is at URL:
https://efo.svn.sourceforge.net/svnroot/efo/trunk/src/efoinowl/InferredEFO
OWLview/EFO_inferred.owl

Hopefully this should be ok.

Cheers,

James




Trish Whetzel wrote:



Hi James,

 

Do you have a similar file with information for EFO?

 

Trish



-- 
European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton,
Cambridge, CB10 1SD, United Kingdom
Tel: + 44 (0) 1223 494 676
Fax: + 44 (0) 1223 492 468 

 

Trish Whetzel, PhD

Outreach Coordinator

The National Center for Biomedical Ontology

Ph: 650-721-2378

whetzel at stanford.edu

http://www.bioontology.org

 

 

 

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