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[bioontology-support] Software Ontology (SVN pull)

James Malone malone at ebi.ac.uk
Thu Dec 17 02:40:34 PST 2009


Hi Misha,

Ok no problem. I've moved it to:

/efo/trunk/docs/bioportalmetadata/EFO_ontologies.txt

Should be good.

Cheers,

James



Michael Dorf wrote:
>
> Hi James,
>
> Sorry to continue confusing things, but since both ontologies (EFO and 
> SWO) are residing within the same repository branch, there is no need 
> for a separate descriptor file. It CAN work, of course, but a cleaner 
> alternative would be to have a single metadata descriptor for both 
> ontologies. I’ve attached a file that lists both ontologies. You can 
> simply copy it into some location within the branch (perhaps in some 
> neutral location, like: “/efo/trunk/src/metadata/EFO_ontologies.txt”, 
> but this is entirely up to you).
>
> If this works for you, copy the file into the repository and send us 
> back the path information.
>
> Thanks,
>
> Misha
>
> *From:* Trish Whetzel [mailto:whetzel at stanford.edu]
> *Sent:* Tuesday, December 15, 2009 2:12 PM
> *To:* Michael Dorf
> *Subject:* Fwd: [bioontology-support] Software Ontology (SVN pull)
>
> Info on the EFO ontology.
>
> Begin forwarded message:
>
>
>
> *From: *James Malone <malone at ebi.ac.uk <mailto:malone at ebi.ac.uk>>
>
> *Date: *December 15, 2009 7:16:05 AM PST
>
> *To: *Trish Whetzel <whetzel at stanford.edu <mailto:whetzel at stanford.edu>>
>
> *Subject: **Re: [bioontology-support] Software Ontology (SVN pull)*
>
> Hi Trish,
>
> I've checked in a similar file for EFO now.
>
> Details for EFO, again anonymous checkout is enabled:
>
> https://efo.svn.sourceforge.net/svnroot/efo/trunk/src/efoinowl/InferredEFOOWLview/EFO_Bioportal/EFO_Bioportal_details.txt
> The EFO OWL file is at URL:
> https://efo.svn.sourceforge.net/svnroot/efo/trunk/src/efoinowl/InferredEFOOWLview/EFO_inferred.owl
>
> Hopefully this should be ok.
>
> Cheers,
>
> James
>
>
>
>
> Trish Whetzel wrote:
>
> Hi James,
>
>     Do you have a similar file with information for EFO?
>
>     Trish
>
>
>
> -- 
> European Bioinformatics Institute, Wellcome Trust Genome Campus, 
> Hinxton, Cambridge, CB10 1SD, United Kingdom
> Tel: + 44 (0) 1223 494 676
> Fax: + 44 (0) 1223 492 468
>
> Trish Whetzel, PhD
>
> Outreach Coordinator
>
> The National Center for Biomedical Ontology
>
> Ph: 650-721-2378
>
> whetzel at stanford.edu <mailto:whetzel at stanford.edu>
>
> http://www.bioontology.org
>


-- 
European Bioinformatics Institute, 
Wellcome Trust Genome Campus, 
Hinxton, 
Cambridge, CB10 1SD, 
United Kingdom
Tel: + 44 (0) 1223 494 676
Fax: + 44 (0) 1223 492 468 




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