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[bioontology-support] Feedback

Trish Whetzel whetzel at
Sat Feb 28 14:23:49 PST 2009

The results of loading the Ontology for Genetic Interval on the development
server looked fine. The BioPortal team has added bug fixes to the
development server that will be used to update the production server on this
Monday AM PST. If the file available for download at: is the latest version, we
can re-upload that file after the bug fixes are applied to the production
server. Otherwise if there is a newer version, can you send us that file?





From: Yu Lin [mailto:linikujp at] 
Sent: Saturday, February 28, 2009 7:35 AM
To: Trish Whetzel
Subject: Re: [bioontology-support] Feedback


No, I didn't upload it. I just downloaded it.





2009/2/28, Trish Whetzel <whetzel at>: 

The signal that the ontology content was uploaded properly is that the word
Explore will be displayed in the Status column on the Home page. Currently
the status is Parsing Ontology, did you recently load the file?





From: Yu Lin [mailto:linikujp at] 
Sent: Saturday, February 28, 2009 1:23 AM
To: Trish Whetzel
Subject: Re: [bioontology-support] Feedback


Dear Trish,


I didn't know that the content of the ontology is not accessible.

I just did upload OWL file as the system suggested.

Is there any methodology available to make the content of the ontology
become accessible through BioPortal?


With thanks,



2009/2/28, Trish Whetzel <whetzel at>: 

It appears that there was a problem with loading the ontology and therefore
is not able to be searched. I am currently loading the file to a test server
for review.

I also noticed that other ontologies that you are listed as the author are
not loaded, ie only the metadata is displayed but the ontology content is
not accessible. Was it your intent to load the ontology content?


Trish Whetzel, PhD
Outreach Coordinator
The National Center for Biomedical Ontology
Ph: 650-721-2378
whetzel at <> 

>-----Original Message-----
>From: bioontology-support-bounces at
>[mailto:bioontology-support-bounces at] On Behalf Of
>admin at
>Sent: Friday, February 27, 2009 9:48 PM
>To: bioontology-support at
>Subject: [bioontology-support] Feedback
>Name : Lin
>Email : linikujp at
>The function of "Search All ontologies" seems can not search all the
>ontologies listed in the "Browse" window. For example, if I search
>"gene", and my ontolgy "Ontology of Genetic Interval", which includes
>the term of gene, will not come out.
>Could you please tell me why? Or could you please tell me how can I make
>my ontology searchable through your "Search" Function. Thank you!
>bioontology-support mailing list
>bioontology-support at



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