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[bioontology-support] Feedback

Natasha Noy noy at
Sun Jul 26 11:34:32 PDT 2009


I played around with it a bit and it appears that the terms that  
exhibit this behavior are obsolete terms that do not have any parents  
defined. Here is an example:

> [Term]
> id: PATO:0000075
> name: threshability
> is_obsolete: true

Two question: what are the terms that you observed this for? If you  
check them against the OBO file, do they have the same structure?
Second, what should we do with these terms that do not have any  
parents defined. Should we not index them at all? If we index them,  
what happens when you click in the search result? Maryann, what would  
be useful?


On Jul 26, 2009, at 11:16 AM, admin at wrote:

> Name : Maryann Martone
> Email : mmartone at
> Comment:
> I'm having trouble viewing the tree structure of PATO in the left  
> navigation bar.  When I try to view a term from PATO, it displays  
> the term in the right panel, but at the left, it only displays the  
> root term "quality".  If I try to go to a term directly from the  
> left search box, it still doesn't display the tree.
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at

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