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[bioontology-support] MS ontology

Trish Whetzel whetzel at stanford.edu
Tue Jun 16 11:57:04 PDT 2009


Sounds good. 

 

One question on the ontology metadata, I see that the release date is
specified here "remark: release date: 2009-06-11", however where is the
ontology version stated?
 
Trish

 

 

From: Eric Deutsch [mailto:edeutsch at systemsbiology.org] 
Sent: Tuesday, June 16, 2009 11:29 AM
To: 'Trish Whetzel'; support at bioontology.org
Cc: 'Eric Deutsch'
Subject: RE: [bioontology-support] MS ontology

 

Hi Trish, thanks. If you're happy to do so, why don't we email
support at bioontology.org whenever there's a new version and have you take
care of it. Later we'll try to come up with an easier solution.

 

Thank you!

Eric

 

 

  _____  

From: Trish Whetzel [mailto:whetzel at stanford.edu] 
Sent: Tuesday, June 16, 2009 10:31 AM
To: 'Eric Deutsch'; support at bioontology.org
Subject: RE: [bioontology-support] MS ontology

 

Hi Eric, 

 

Thanks for the pointer to the new file. Currently there are 2 ways that the
file can be updated for ontologies that are not within the obo sourceforge
cvs directory.  The ways to update the file in BioPortal are either for us
to load the file when there is a new version given some sort of alert of the
new file (email, RSS, etc) or someone from PSI can load the file. It is very
easy to load a new version and takes only ~5 minutes from downloading the
file from the source location to uploading into BioPortal.  Do you have a
preference on how the file is updated; we are happy to load the file given
notice of a new version. 

 

Trish

 

 

From: bioontology-support-bounces at lists.stanford.edu
[mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of Eric
Deutsch
Sent: Monday, June 15, 2009 1:49 PM
To: support at bioontology.org
Cc: Eric Deutsch
Subject: [bioontology-support] MS ontology

 

Hi, I notice that the MS ontology:

 

http://bioportal.bioontology.org/ontologies/39281

 

is quite out of date. The latest is much newer an available from our CVS:

 

http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controll
edVocabulary/psi-ms.obo

 

Can we get the BioPortal site updated?

 

What needs to happen for our ontology to get automatically updated whenever
we can a new version?

 

Thanks!

Eric

 

 

 

 

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