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[bioontology-support] VO visualization in BioPortal

Trish Whetzel plwhetzel at gmail.com
Wed Jun 24 09:31:14 PDT 2009


Sure, I've downloaded 1.0.55 and it opened fine in Protege 3.4 and have
loaded it to the stage database as a test. I'll check back later this
afternoon.

Trish


On Wed, Jun 24, 2009 at 3:55 AM, Yongqun He <yongqunh at med.umich.edu> wrote:

>  Hi Trish,
>
> I have updated VO again. See:
> http://bioportal.bioontology.org/ontologies/40188
> We usually use Protege 4 for VO development. This updated VO is confirmed
> to be saved as a RDF/XML file. I can open it using Protégé 3.4 although some
> Java bugs were displayed.
>
> Can you download this VO version and test it again?
>
> Thanks!
>
> --Oliver
>
> >>> Trish Whetzel <plwhetzel at gmail.com> 6/23/2009 12:52 PM >>>
>
> Hi Oliver,
>
> Apologies for the delay - I was out of town. Are you able to open the file
> in Protege 3.4? Last I tried to open the file in p4 to save as RDF/XML (to
> open in Protege 3.4) there were errors.
>
> Trish
>
>
> On Wed, Jun 10, 2009 at 5:03 AM, Yongqun He <yongqunh at med.umich.edu>wrote:
>
>>  Hi Trish,
>>  I uploaded Vaccine Ontology (VO) in BioPortal yesterday:
>> http://bioportal.bioontology.org/ontologies/40116
>> However, the current VO cannot now be visualized in BioPortal.
>>  Could you help to find out the potential reason(s)? One change we made
>> is in the "Synonym Slot (Owl Only) (e.g. SKOS:altLabel)", we changed
>> pervious 'synonym' to 'oboInOwl:Synonym'. We made this change in VO because
>> it is used in OBO.
>>  Thanks!
>>  Oliver
>>  Yongqun "Oliver" He, DVM, PhD
>> Assistant Professor
>> Unit for Laboratory Animal Medicine
>> Department of Microbiology and Immunology
>> and Center for Computational Medicine and Biology
>> University of Michigan Medical School
>> Office: Room 105, Animal Research Facility (ARF)
>> Mailing: 018 ARF, 1150 W. Medical Center Dr.
>> Ann Arbor, MI 48109
>> Email: yongqunh at med.umich.edu
>> Tel: 734-615-8231 (O); 734-615-2455 (L)
>> Fax: 734-936-3235
>> http://www.ulam.umich.edu/academic/he.htm
>> http://www.med.umich.edu/microbio/bio/he.htm
>> http://www.hegroup.org/
>>
>> **********************************************************
>> Electronic Mail is not secure, may not be read every day, and should not
>> be used for urgent or sensitive issues
>>
>
>
>  **********************************************************
> Electronic Mail is not secure, may not be read every day, and should not be
> used for urgent or sensitive issues
>
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