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[bioontology-support] Mappings from EFO to other ontologies

Trish Whetzel whetzel at stanford.edu
Fri Mar 6 08:18:24 PST 2009


No problem, just wanted to check.

WRT to the TAIR reference, is there a way to download that, ie does it exist
in an ontology file?

Trish 


>-----Original Message-----
>From: James Malone [mailto:malone at ebi.ac.uk]
>Sent: Friday, March 06, 2009 8:06 AM
>To: Trish Whetzel
>Cc: 'Helen Parkinson'; support at bioontology.org
>Subject: Re: Mappings from EFO to other ontologies
>
>Hi Trish,
>
>Apologies for slow reply.
>
>For items below:
>> EFO_0000002	CS57511
>>
>http://www.arabidopsis.org/servlets/TairObject?type=stock&id=1000311932
>>
> This is an Arabidopsis thaliana strain as described in TAIR Just
>realised TAIR is not in BioPortal...
>> EFO_0001058	sensory system disease	A sensory system disease is a
>> disease which has as location the sensory system.
>>
>This has no external mapping, sorry this is an error - the definition is
>in the wrong annotation property!  Will fix it now.
>> EFO_0000322	cell line	Atwood et al (2000) OED of Biochemistry
>and
>> Molecular Biology, Oxford University Press.
>>
>Citation here is a book, please ignore this.
>> EFO_0000746	proteomic profiling	ArrayExpress production team
>>
>Again, please ignore, these are people rather than external things.  I
>need to filter these somehow...
>
>Thanks guys,
>
>James
>
>> Not quite sure what they should be mapped to.
>>
>>
>> Trish
>>
>>
>>
>
>
>--
>European Bioinformatics Institute,
>Wellcome Trust Genome Campus,
>Hinxton,
>Cambridge, CB10 1SD,
>United Kingdom
>Tel: + 44 (0) 1223 494 676
>Fax: + 44 (0) 1223 492 468





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