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[bioontology-support] Mappings from EFO to other ontologies

James Malone malone at ebi.ac.uk
Fri Mar 6 08:23:00 PST 2009


Good question.  I found this 
http://www.arabidopsis.org/download/index.jsp  and there is a support 
email curator at arabidopsis.org
I actually don't know if they have a stand alone ontology download for 
TAIR though.

James



Trish Whetzel wrote:
> No problem, just wanted to check.
>
> WRT to the TAIR reference, is there a way to download that, ie does it exist
> in an ontology file?
>
> Trish 
>
>
>   
>> -----Original Message-----
>> From: James Malone [mailto:malone at ebi.ac.uk]
>> Sent: Friday, March 06, 2009 8:06 AM
>> To: Trish Whetzel
>> Cc: 'Helen Parkinson'; support at bioontology.org
>> Subject: Re: Mappings from EFO to other ontologies
>>
>> Hi Trish,
>>
>> Apologies for slow reply.
>>
>> For items below:
>>     
>>> EFO_0000002	CS57511
>>>
>>>       
>> http://www.arabidopsis.org/servlets/TairObject?type=stock&id=1000311932
>>     
>> This is an Arabidopsis thaliana strain as described in TAIR Just
>> realised TAIR is not in BioPortal...
>>     
>>> EFO_0001058	sensory system disease	A sensory system disease is a
>>> disease which has as location the sensory system.
>>>
>>>       
>> This has no external mapping, sorry this is an error - the definition is
>> in the wrong annotation property!  Will fix it now.
>>     
>>> EFO_0000322	cell line	Atwood et al (2000) OED of Biochemistry
>>>       
>> and
>>     
>>> Molecular Biology, Oxford University Press.
>>>
>>>       
>> Citation here is a book, please ignore this.
>>     
>>> EFO_0000746	proteomic profiling	ArrayExpress production team
>>>
>>>       
>> Again, please ignore, these are people rather than external things.  I
>> need to filter these somehow...
>>
>> Thanks guys,
>>
>> James
>>
>>     
>>> Not quite sure what they should be mapped to.
>>>
>>>
>>> Trish
>>>
>>>
>>>
>>>       
>> --
>> European Bioinformatics Institute,
>> Wellcome Trust Genome Campus,
>> Hinxton,
>> Cambridge, CB10 1SD,
>> United Kingdom
>> Tel: + 44 (0) 1223 494 676
>> Fax: + 44 (0) 1223 492 468
>>     
>
>   


-- 
European Bioinformatics Institute, 
Wellcome Trust Genome Campus, 
Hinxton, 
Cambridge, CB10 1SD, 
United Kingdom
Tel: + 44 (0) 1223 494 676
Fax: + 44 (0) 1223 492 468 




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