Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] Mappings from EFO to other ontologies

Trish Whetzel whetzel at stanford.edu
Fri Mar 6 10:04:14 PST 2009


Thanks - I'll check that page.

Trish

>-----Original Message-----
>From: James Malone [mailto:malone at ebi.ac.uk]
>Sent: Friday, March 06, 2009 8:23 AM
>To: Trish Whetzel
>Cc: 'Helen Parkinson'; support at bioontology.org
>Subject: Re: Mappings from EFO to other ontologies
>
>Good question.  I found this
>http://www.arabidopsis.org/download/index.jsp  and there is a support
>email curator at arabidopsis.org
>I actually don't know if they have a stand alone ontology download for
>TAIR though.
>
>James
>
>
>
>Trish Whetzel wrote:
>> No problem, just wanted to check.
>>
>> WRT to the TAIR reference, is there a way to download that, ie does it
>exist
>> in an ontology file?
>>
>> Trish
>>
>>
>>
>>> -----Original Message-----
>>> From: James Malone [mailto:malone at ebi.ac.uk]
>>> Sent: Friday, March 06, 2009 8:06 AM
>>> To: Trish Whetzel
>>> Cc: 'Helen Parkinson'; support at bioontology.org
>>> Subject: Re: Mappings from EFO to other ontologies
>>>
>>> Hi Trish,
>>>
>>> Apologies for slow reply.
>>>
>>> For items below:
>>>
>>>> EFO_0000002	CS57511
>>>>
>>>>
>>>
>http://www.arabidopsis.org/servlets/TairObject?type=stock&id=1000311932
>>>
>>> This is an Arabidopsis thaliana strain as described in TAIR Just
>>> realised TAIR is not in BioPortal...
>>>
>>>> EFO_0001058	sensory system disease	A sensory system disease is
a
>>>> disease which has as location the sensory system.
>>>>
>>>>
>>> This has no external mapping, sorry this is an error - the definition
>is
>>> in the wrong annotation property!  Will fix it now.
>>>
>>>> EFO_0000322	cell line	Atwood et al (2000) OED of
Biochemistry
>>>>
>>> and
>>>
>>>> Molecular Biology, Oxford University Press.
>>>>
>>>>
>>> Citation here is a book, please ignore this.
>>>
>>>> EFO_0000746	proteomic profiling	ArrayExpress production team
>>>>
>>>>
>>> Again, please ignore, these are people rather than external things.
>I
>>> need to filter these somehow...
>>>
>>> Thanks guys,
>>>
>>> James
>>>
>>>
>>>> Not quite sure what they should be mapped to.
>>>>
>>>>
>>>> Trish
>>>>
>>>>
>>>>
>>>>
>>> --
>>> European Bioinformatics Institute,
>>> Wellcome Trust Genome Campus,
>>> Hinxton,
>>> Cambridge, CB10 1SD,
>>> United Kingdom
>>> Tel: + 44 (0) 1223 494 676
>>> Fax: + 44 (0) 1223 492 468
>>>
>>
>>
>
>
>--
>European Bioinformatics Institute,
>Wellcome Trust Genome Campus,
>Hinxton,
>Cambridge, CB10 1SD,
>United Kingdom
>Tel: + 44 (0) 1223 494 676
>Fax: + 44 (0) 1223 492 468





More information about the bioontology-support mailing list