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[bioontology-support] [bioportal-user-group] BioPortal User Group TCon scheduling

Nathan Baker baker at biochem.wustl.edu
Fri Mar 13 06:33:39 PDT 2009


Hi Trish --

Is PubChem on your list of resources?  OBR support of this resource would be
very helpful for our project.

Thanks,

Nathan

On Thu, Mar 12, 2009 at 6:33 PM, Trish Whetzel <whetzel at stanford.edu> wrote:

>  Hi David,
>
>
>
> To follow-up on this thread I wanted to touch base to see if there are
> additional resources, other than PubMed that would useful to add to OBR
> (this thread focused on literature resources)? The ones that were mentioned,
> Scopus, Web of Science, Google Scholar, are problematic due to licensing
> issues. Are these critical to meet your specific aims?
>
>
>
> Trish
>
>
>
>
>
>  To help get a better sense of where to go from here, would you
> characterize including this resource as nice to have or blocking a specific
> aim?
>
>
> It would be "nice" for my part of the project but it might be essential for
> David's portion -- I've Cc'ed him.  One of the major concerns is that PubMed
> only covers a small portion of the literature that is relevant for
> nanomedicine research.  David, can you say a bit more about this and how it
> might relate to your knowledgebase aim?
>
> Thanks,
>
> Nathan
>
>
>  Trish
>
>
>
>
>
> *From:* Nathan Baker [mailto:sobolevnrm at gmail.com] *On Behalf Of *Nathan
> Baker
> *Sent:* Tuesday, February 17, 2009 8:16 AM
> *To:* Trish Whetzel
> *Cc:* 'Dennis Thomas'; support at bioontology.org
>
>
> *Subject:* Re: [bioportal-user-group] BioPortal User Group TCon scheduling
>
>
>
> Hi Trish --
>
>
>
> That's too bad; thanks for checking, though.  I inquired with Google
> Scholar once before and they weren't very helpful.  However, perhaps
> Stanford has better connections and Google might be willing to help a
> specifically-informatics center such as NCBO?
>
>
>
> Thanks,
>
>
>
> Nathan
>
>
>
> On Feb 16, 2009, at 11:44 PM, Trish Whetzel wrote:
>
>
>
> Hi Nathan,
>
>
>
> As you surmised, Scopus and Web of Science would not be able to be added
> due to the cost of the licenses for those resources.
>
>
>
> Trish
>
>
>
>
>
> *From:* Trish Whetzel [mailto:whetzel at stanford.edu <whetzel at stanford.edu>
> ]
> *Sent:* Thursday, February 12, 2009 6:17 PM
> *To:* 'Nathan Baker'
> *Cc:* 'Dennis Thomas'
> *Subject:* RE: [bioportal-user-group] BioPortal User Group TCon scheduling
>
>
>
> I'll add it to the Feature Request tracker and we can see if that's
> possible.
>
>
>
> Trish
>
>
>
>
>
> *From:* sobolevnrm at gmail.com [mailto:sobolevnrm at gmail.com<sobolevnrm at gmail.com>
> ] *On Behalf Of *Nathan Baker
> *Sent:* Thursday, February 12, 2009 6:05 PM
> *To:* Trish Whetzel
> *Cc:* Dennis Thomas
> *Subject:* Re: [bioportal-user-group] BioPortal User Group TCon scheduling
>
>
>
> Hi Trish --
>
> Yes, Scopus from Elsevier or a resource like Web of Science (or even Google
> Scholar).  Any of those would allow us to draw from literature resources
> beyond PubMed which is important for nanoscience.  However, I think they're
> all fraught with serious licensing issues...
>
> Thanks,
>
> Nathan
>
> On Thu, Feb 12, 2009 at 8:01 PM, Trish Whetzel <whetzel at stanford.edu>
> wrote:
>
> Ok, do you mean Scopus from Elsevier?
>
>
>
> Trish
>
>
>
>
>
> *From:* sobolevnrm at gmail.com [mailto:sobolevnrm at gmail.com] *On Behalf Of *Nathan
> Baker
> *Sent:* Thursday, February 12, 2009 5:58 PM
> *To:* Trish Whetzel
> *Cc:* Dennis Thomas
>
>
> *Subject:* Re: [bioportal-user-group] BioPortal User Group TCon scheduling
>
>
>
> Hi Trish --
>
> We've been in close enough contact with the Bioportal staff that most of
> our needs have already been addressed.  I'll Cc Dennis to see if he has any
> additional suggestions but I think we're pretty happy users right now
> (unless you'd like to add Scopus as an OBR resource). :)
>
> Thanks,
>
> Nathan
>
> On Thu, Feb 12, 2009 at 2:38 AM, Trish Whetzel <whetzel at stanford.edu>
> wrote:
>
> Hi Nathan,
>
>
>
> The meeting will cover a demo of the new features of BioPortal and collect
> input on requested features. This feedback will be merged with that from the
> All-Hands meeting and will then be listed as survey items for all on the
> BioPortal user group email to rate in importance.  If there are specific
> features that you would like to request, please do send those along.
>
>
>
> Trish
>
>
>
>
>
> *From:* sobolevnrm at gmail.com [mailto:sobolevnrm at gmail.com] *On Behalf Of *Nathan
> Baker
>
>
> *Sent:* Wednesday, February 04, 2009 3:34 AM
> *To:* Trish Whetzel
>
> *Subject:* Re: [bioportal-user-group] BioPortal User Group TCon scheduling
>
>
>
> Hi Trish --
>
> Unfortunately, my schedule has filled up for that time in the past week; I
> forgot to update the Doodle poll.  I think Dennis will be able to attend and
> hopefully can provide sufficient feedback.  If you can send me the agenda
> for the meeting, I'll provide my feedback remotely.
>
> Sorry,
>
> Nathan
>
> On Tue, Feb 3, 2009 at 11:29 PM, Trish Whetzel <whetzel at stanford.edu>
> wrote:
>
> Based on the feedback from the Doodle poll, we will schedule the BioPortal
> User Group teleconference for Friday, February 13 at 11:00 AM PST.
>
>
>
> Trish
>
>
>
>
>
> *From:* Trish Whetzel [mailto:whetzel at stanford.edu]
> *Sent:* Tuesday, January 27, 2009 12:27 PM
> *To:* 'bioportal-user-group at lists.stanford.edu'
> *Subject:* BioPortal User Group TCon scheduling
>
>
>
> Dear BioPortal User Group,
>
>
>
> We would like to get your feedback on the newly added features to
> BioPortal. We would also like your help in setting the priorities for the
> features in the upcoming releases.
>
>
>
> We would like to schedule a TCon the second week of February, 9-13 to
> discuss these items. Please complete the following Doodle schedule request,
> with proposed days/times for the week of February 9-13:
> http://doodle.com/participation.html?pollId=6eez6hkbvuwukuci  We'll have
> the survey up until Monday, February 2, before deciding on the schedule.
>
>
>
>
>
> Trish and Natasha
>
>
>
>
>
>
> _______________________________________________
> bioportal-user-group mailing list
> bioportal-user-group at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioportal-user-group
>
>
>
>
> --
> Associate Professor, Dept. of Biochemistry and Molecular Biophysics
> Center for Computational Biology, Washington University in St. Louis
> Web: http://cholla.wustl.edu/
>
>
>
>
> --
> Associate Professor, Dept. of Biochemistry and Molecular Biophysics
> Center for Computational Biology, Washington University in St. Louis
> Web: http://cholla.wustl.edu/
>
>
>
>
> --
> Associate Professor, Dept. of Biochemistry and Molecular Biophysics
> Center for Computational Biology, Washington University in St. Louis
> Web: http://cholla.wustl.edu/
>
>
>
> --
>
> Associate Professor, Dept. of Biochemistry and Molecular Biophysics
>
> Center for Computational Biology, Washington University in St. Louis
>
> Web: http://cholla.wustl.edu/
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
> --
> Associate Professor, Dept. of Biochemistry and Molecular Biophysics
> Center for Computational Biology, Washington University in St. Louis
> Web: http://cholla.wustl.edu/
>



-- 
Associate Professor, Dept. of Biochemistry and Molecular Biophysics
Center for Computational Biology, Washington University in St. Louis
Web: http://cholla.wustl.edu/
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