Search Mailing List Archives
[bioontology-support] duplicate relations showing in FlexoViz.html graph viewer
noy at stanford.edu
Tue Nov 10 12:17:27 PST 2009
Also not that the second relationship is actually "[R] part_of", not
On Nov 10, 2009, at 12:08 PM, Trish Whetzel wrote:
> Thanks Chris. It looks like the inverse relations were loaded and
> therefore are also being displayed. In the case of part_of/part of
> the arrows are also in the same direction.
> I'll assign this to Pradip to check how the ontology is loaded.
> On Nov 10, 2009, at 11:37 AM, Chris Callendar wrote:
>> Hi Doug and Trish,
>> I've comented on the bug report that is entered in our system (see
>> the link below), but to summarize what I said:
>> The error is in the rest services, not in FlexViz.
>> The relationship from central nervous system to motor axons
>> peripheral is "part_of", see this XML:
>> And the relationship from motor axons peripheral to central nervous
>> system is "part of", see this XML:
>> FlexViz will only show one relationship if they are the same type,
>> but in this case it is not smart enough to realize that there is an
>> error in the ontology and "part of" and "part_of" are actually the
>> same thing.
>> From: Trish Whetzel [mailto:whetzel at stanford.edu]
>> Sent: November 10, 2009 6:29 AM
>> To: Chris Callendar
>> Cc: support at bioontology.org
>> Subject: Fwd: [bioontology-support] duplicate relations showing in
>> FlexoViz.html graph viewer
>> Hi Chris,
>> Can you take a look at this one?
>> Begin forwarded message:
>>> From: Doug Howe <dhowe at zfin.org>
>>> Date: November 9, 2009 4:47:52 PM PST
>>> To: support at bioontology.org
>>> Subject: [bioontology-support] duplicate relations showing in
>>> FlexoViz.html graph viewer
>>> Version: v2.1.8, October 23rd, 2009
>>> Operating System: Mac OS 10.5.8
>>> Flash Version: MAC 10,0,32,18
>>> Flash Parameters: ontology=40580&v=2.1.8&log=true&nodeid=&server=
>>> Browser URL: http://keg.cs.uvic.ca/ncbo/flexviz/FlexoViz.html#
>>> I'm using the FlexoViz.html to view the zebrafish anatomy
>>> ontology. Looking at the term 'motor axons peripheral' (which
>>> has it's own problems!), the graph seems to show two 'part of'
>>> relations. One is labeled 'part of' and one 'part_of'. Ditto for
>>> 'develops_from' and 'develops from'.
>>> Is this a bug in the FlexoViz.html or maybe something strange in
>>> our ontology format?
>>> Doug Howe, Ph.D.
>>> Scientific Curator
>>> Zebrafish Information Network
>>> 5291 University of Oregon
>>> Eugene, OR 97401-5291
>>> dhowe at zfin.org
>>> skype: doug.howe
>>> bioontology-support mailing list
>>> bioontology-support at lists.stanford.edu
>> No virus found in this incoming message.
>> Checked by AVG - www.avg.com
>> Version: 9.0.704 / Virus Database: 270.14.57/2492 - Release Date:
>> 11/09/09 04:11:00
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
More information about the bioontology-support