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[bioontology-support] Bioportal mappings

Trish Whetzel whetzel at stanford.edu
Thu Nov 12 08:38:10 PST 2009


Hi Quentin,

That might be possible since there are 145,240 - 165,185 mappings for  
these ontologies. I'll check on other options to provide this mapping  
information to you.

Trish


On Nov 12, 2009, at 4:53 AM, Quentin Reul wrote:

> Dear Natasha,
>
> I have had no problem downloading the respective ontologies. The  
> main reason I contacted you yesterday is that every time I try to  
> export the mappings into RDF, I get an 500 Internal Error message.  
> Could this be caused by the number of correspondences available?
>
> Thank you very much for your help thus far.
>
> Kind regards,
>
> Quentin Reul
>
> On 11 Nov 2009, at 23:06, Natasha Noy wrote:
>
>> Dear Quentin,
>>
>> You should be able to download the ontologies themselves by  
>> clicking on the ontology name -- that takes you to the page with  
>> the download links. For the two ontologies that you listed, that  
>> would be:
>> http://bioportal.bioontology.org/ontologies/13352
>> http://bioportal.bioontology.org/ontologies/13356
>>
>> For the mappings, go to
>> http://bioportal.bioontology.org/mappings
>> select the set of mappings that you need, by selecting the  
>> ontologies, and then click on "Export".
>>
>> Hope this helps,
>>
>> Natasha
>>
>>
>> On Nov 11, 2009, at 6:24 AM, Quentin Reul wrote:
>>
>>> Dear Sir/Madam,
>>>
>>> I'm a PhD student focusing on ontology mapping. I have looked at  
>>> the website and I'm interested in several ontologies (e.g. Human  
>>> Developmental Anatomy, Abstract and Timed) and their mappings.  
>>> However, I'm unable to download the information from the website.
>>>
>>> Would you be able to advise on this problem?
>>>
>>> Kind regards,
>>>
>>> Quentin
>>>
>>> ============================
>>> Quentin Reul
>>> Researcher
>>>
>>> Vrije Universiteit Brussel
>>> STARLab 10G730
>>> Pleinlaan 2
>>> 1050 Brussel
>>> Tel: +32 (0)2 629 3487
>>> Fax: +32 (0)2 629 3819
>>> http://www.starlab.vub.ac.be
>>>
>>>
>>>
>>>
>>>
>>>
>>> _______________________________________________
>>> bioontology-support mailing list
>>> bioontology-support at lists.stanford.edu
>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>
>
>
> ============================
> Quentin Reul
> Researcher
>
> Vrije Universiteit Brussel
> STARLab 10G730
> Pleinlaan 2
> 1050 Brussel
> Tel: +32 (0)2 629 3487
> Fax: +32 (0)2 629 3819
> http://www.starlab.vub.ac.be
>
>
>
>
>
>
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support

Trish Whetzel, PhD
Outreach Coordinator
The National Center for Biomedical Ontology
Ph: 650-721-2378
whetzel at stanford.edu
http://www.bioontology.org



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