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[bioontology-support] Format for mappings file

Natasha Noy noy at stanford.edu
Wed Sep 23 14:43:23 PDT 2009


Trish,

Tab-delimited is fine. The closer it is to the format in the mappings  
table in the front-end database, the better of course. See the  
attached sample. If the metadata such as mapping type and source are  
not the same for the whole set, you can put those in as columns as well.

Natasha

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On Sep 23, 2009, at 11:08 AM, Trish Whetzel wrote:

> I would like to collect mappings and need to know how the file  
> should be formatted, e.g. what columns need to be included in the  
> file, should it be tab-delimited, CSV, XML and how the values in  
> each column should be presented, e.g. is the ontology name enough  
> information or should a BioPortal ontology version identifier be  
> included.
>
> Thanks,
> Trish
>
>
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