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[bioontology-support] BioPortal web services

Paul R Alexander palexander at stanford.edu
Wed Apr 7 11:53:53 PDT 2010


We're looking into this issue, it does have to do with the search index.

Paul

On 4/7/10 10:14 AM, Trish Whetzel wrote:
> Yes, that is not updated:
> <ontologyDisplayLabel>Microarray experimental 
> conditions</ontologyDisplayLabel>
>
> Paul, does the Search index need to be updated to resolve?
>
> Trish
>
>
> On Apr 7, 2010, at 10:09 AM, Junmin Liu wrote:
>
>> Hi, Paul, Trish
>> Thanks for quick response.
>>
>> How about this rest url:
>>
>> http://rest.bioontology.org/bioportal/search/investigator/?ontologyids=1131&email=junmin@pcbi.upenn.edu? 
>>
>>
>> It gives me display label as "microarray experimental conditions".
>>
>> Thanks,
>>
>> ---junmin
>>
>> On Wed, 7 Apr 2010, Paul R Alexander wrote:
>>
>>> I'm also seeing the proper name 'MGED Ontology' in the web services 
>>> (see attached XML).
>>>
>>> Paul
>>> <http://5048wilder.dyndns.org:8112/>
>>>
>>> On 4/7/10 9:45 AM, Trish Whetzel wrote:
>>>> Hmm, that's odd. I see MGED Ontology. Did you clear your browser 
>>>> cache? WRT
>>>> to the Web service value, I can check on that after 11:00am today 
>>>> since I am
>>>> hosting a Webinar in a few minutes.
>>>> I've cc'd the support list in case someone has time to look into 
>>>> the Web
>>>> service response before me :-)
>>>> Trish
>>>>> -----Original Message-----
>>>>> From: Junmin Liu [mailto:junmin at pcbi.upenn.edu]
>>>>> Sent: Wednesday, April 07, 2010 9:41 AM
>>>>> To: Trish Whetzel
>>>>> Subject: RE: BioPortal web services
>>>>> Hi, Trish
>>>>> It is still there:
>>>>> http://bioportal.bioontology.org/ontologies/38801
>>>>> It is still being called "microarray experimental conditions' in 
>>>>> the web
>>>>> service.
>>>>> --junmin
>>>>> On Wed, 7 Apr 2010, Trish Whetzel wrote:
>>>>>> Hi Junmin,
>>>>>> Yes, I updated the name to MGED Ontology and wrote back, maybe the
>>>>> email was
>>>>>> held up in posting? Were there other items to address?
>>>>>> Trish
>>>>>>> -----Original Message-----
>>>>>>> From: Junmin Liu [mailto:junmin at pcbi.upenn.edu]
>>>>>>> Sent: Wednesday, April 07, 2010 9:20 AM
>>>>>>> To: Trish Whetzel
>>>>>>> Subject: Re: BioPortal web services
>>>>>>> Hi, Trish
>>>>>>> Did you get a chance to look at my email sent to your gmail 
>>>>>>> account?
>>>>>>> It is regarding the MAGE ontology display label in bioportal.
>>>>>>> Thanks,
>>>>>>> --junmin
>>>>>>> On Wed, 5 Aug 2009, Trish Whetzel wrote:
>>>>>>>> Hi Junmin,
>>>>>>>> I saw Chris at the ICBO conference and he mentioned that you were
>>>>>>> trying out
>>>>>>>> the BioPortal REST services, I believe for Annotare. I am 
>>>>>>>> interested
>>>>>>> to know
>>>>>>>> how use of the service is working for you and if you have any
>>>>> comments
>>>>>>> or
>>>>>>>> suggestions.
>>>>>>>> Trish
>>>>>>>> Trish Whetzel, PhD
>>>>>>>> Outreach Coordinator
>>>>>>>> The National Center for Biomedical Ontology
>>>>>>>> Ph: 650-721-2378
>>>>>>>> <mailto:whetzel at stanford.edu>  whetzel at stanford.edu
>>>>>>>> <http://www.bioontology.org/>  http://www.bioontology.org
>>>> _______________________________________________
>>>> bioontology-support mailing list
>>>> bioontology-support at lists.stanford.edu
>>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>>>
>



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