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[bioontology-support] BioPortal web services

Trish Whetzel whetzel at stanford.edu
Wed Apr 7 14:31:34 PDT 2010


Hi Junmin, 

The value is now updated as displayed in: <ontologyDisplayLabel>MGED
Ontology</ontologyDisplayLabel> in the XML from:
http://rest.bioontology.org/bioportal/search/investigator/?ontologyids=1131&
email=junmin at pcbi.upenn.edu. 

Trish


>-----Original Message-----
>From: Paul R Alexander [mailto:palexander at stanford.edu]
>Sent: Wednesday, April 07, 2010 11:54 AM
>To: Trish Whetzel
>Cc: Junmin Liu; support at bioontology.org
>Subject: Re: [bioontology-support] BioPortal web services
>
>We're looking into this issue, it does have to do with the search index.
>
>Paul
>
>On 4/7/10 10:14 AM, Trish Whetzel wrote:
>> Yes, that is not updated:
>> <ontologyDisplayLabel>Microarray experimental
>> conditions</ontologyDisplayLabel>
>>
>> Paul, does the Search index need to be updated to resolve?
>>
>> Trish
>>
>>
>> On Apr 7, 2010, at 10:09 AM, Junmin Liu wrote:
>>
>>> Hi, Paul, Trish
>>> Thanks for quick response.
>>>
>>> How about this rest url:
>>>
>>>
>http://rest.bioontology.org/bioportal/search/investigator/?ontologyids=1
>131&email=junmin at pcbi.upenn.edu?
>>>
>>>
>>> It gives me display label as "microarray experimental conditions".
>>>
>>> Thanks,
>>>
>>> ---junmin
>>>
>>> On Wed, 7 Apr 2010, Paul R Alexander wrote:
>>>
>>>> I'm also seeing the proper name 'MGED Ontology' in the web services
>>>> (see attached XML).
>>>>
>>>> Paul
>>>> <http://5048wilder.dyndns.org:8112/>
>>>>
>>>> On 4/7/10 9:45 AM, Trish Whetzel wrote:
>>>>> Hmm, that's odd. I see MGED Ontology. Did you clear your browser
>>>>> cache? WRT
>>>>> to the Web service value, I can check on that after 11:00am today
>>>>> since I am
>>>>> hosting a Webinar in a few minutes.
>>>>> I've cc'd the support list in case someone has time to look into
>>>>> the Web
>>>>> service response before me :-)
>>>>> Trish
>>>>>> -----Original Message-----
>>>>>> From: Junmin Liu [mailto:junmin at pcbi.upenn.edu]
>>>>>> Sent: Wednesday, April 07, 2010 9:41 AM
>>>>>> To: Trish Whetzel
>>>>>> Subject: RE: BioPortal web services
>>>>>> Hi, Trish
>>>>>> It is still there:
>>>>>> http://bioportal.bioontology.org/ontologies/38801
>>>>>> It is still being called "microarray experimental conditions' in
>>>>>> the web
>>>>>> service.
>>>>>> --junmin
>>>>>> On Wed, 7 Apr 2010, Trish Whetzel wrote:
>>>>>>> Hi Junmin,
>>>>>>> Yes, I updated the name to MGED Ontology and wrote back, maybe
>the
>>>>>> email was
>>>>>>> held up in posting? Were there other items to address?
>>>>>>> Trish
>>>>>>>> -----Original Message-----
>>>>>>>> From: Junmin Liu [mailto:junmin at pcbi.upenn.edu]
>>>>>>>> Sent: Wednesday, April 07, 2010 9:20 AM
>>>>>>>> To: Trish Whetzel
>>>>>>>> Subject: Re: BioPortal web services
>>>>>>>> Hi, Trish
>>>>>>>> Did you get a chance to look at my email sent to your gmail
>>>>>>>> account?
>>>>>>>> It is regarding the MAGE ontology display label in bioportal.
>>>>>>>> Thanks,
>>>>>>>> --junmin
>>>>>>>> On Wed, 5 Aug 2009, Trish Whetzel wrote:
>>>>>>>>> Hi Junmin,
>>>>>>>>> I saw Chris at the ICBO conference and he mentioned that you
>were
>>>>>>>> trying out
>>>>>>>>> the BioPortal REST services, I believe for Annotare. I am
>>>>>>>>> interested
>>>>>>>> to know
>>>>>>>>> how use of the service is working for you and if you have any
>>>>>> comments
>>>>>>>> or
>>>>>>>>> suggestions.
>>>>>>>>> Trish
>>>>>>>>> Trish Whetzel, PhD
>>>>>>>>> Outreach Coordinator
>>>>>>>>> The National Center for Biomedical Ontology
>>>>>>>>> Ph: 650-721-2378
>>>>>>>>> <mailto:whetzel at stanford.edu>  whetzel at stanford.edu
>>>>>>>>> <http://www.bioontology.org/>  http://www.bioontology.org
>>>>> _______________________________________________
>>>>> bioontology-support mailing list
>>>>> bioontology-support at lists.stanford.edu
>>>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>>>>
>>




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