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[bioontology-support] Feedback

Natasha Noy noy at
Wed Apr 14 16:02:54 PDT 2010

Thank you, Mark, for bringing this up to our attention. There were  
some problems on our server that we have now fixed.

Please try it out and do not hesitate to let us know if you see more  

Thank you for your feedback!


On Apr 14, 2010, at 4:08 AM, admin at wrote:

> Name : Mark Woodbridge
> Email : m.woodbridge at
> Comment:
> Hi,
> I'm trying to use the Annotator to identify ontology terms in free  
> text. I'm not sure whether it is suitable for this use case, but I  
> started with something simple:
> curl -d "textToAnnotate=river 
> + 
> bank 
> &ontologiesToKeepInResult=42277&longestOnly=true&withSynonyms=false"  
> -s ""
> i.e. I would like to search the Environment Ontology for "river  
> bank" (ENVO:00000143). This seems to return "bar" (a synonym which I  
> tried to exclude using the withSynonyms parameter) and "bank" but  
> not "river bank".
> Am I doing something wrong? Any help would be greatly appreciated.
> Mark.
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at

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