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noy at stanford.edu
Fri Apr 16 15:18:20 PDT 2010
I just talked to Cherie: apparently, the latest version of MP had a
parsing error when the synchronization with OBS happened.
Cherie will do two things:
1. Add the logic to her code that does the following: if OBS has data
for ontology X and the latest version of X in Bioportal has status
"Parsing error" or "Waiting to parse", keep the current OBS data for X
(currently, that data is deleted -- that's what happened with MP).
2. Get a list of all ontologies that exist in Bioportal and have no
data in OBS. We will ask OPTRA to run synchronization for some or all
of these ontologies ASAP.
On Apr 16, 2010, at 2:07 PM, Rob Tirrell wrote:
> Hi - could you take a look at this issue? Thanks!
> Rob Tirrell
> ---------- Forwarded message ----------
> From: Nigam Shah <nigam at stanford.edu>
> Date: Fri, Apr 16, 2010 at 12:18
> Subject: Re: RANSUM
> To: Rob Tirrell <rpt at stanford.edu>
> Yes ... there was a lot of data corruption in the /obs
> ontologies ... Cherie Youn is fixing that. Send a request to support at bioontology.org
> asking for MP in the /obs. It should be easy to include it.
> cc "Natasha Noy" <noy at stanford.edu> as well.
> PS: I am currently on leave, otherwise could have followed up myself.
> On Fri, Apr 16, 2010 at 12:06 PM, Rob Tirrell <rpt at stanford.edu>
> hmmm... why would calls like rest.bioontology.org/bioportal/virtual/
> rootpath/1025/MP:0000001?email=example at example.org be failing? Is it
> because MP is not in rest.bioontology.org/obs/ontologies all of the
> sudden (it is in the other ontologies list)?
> Rob Tirrell
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