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[bioontology-support] RANSUM

Trish Whetzel whetzel at stanford.edu
Fri Apr 16 15:25:08 PDT 2010


Sounds great, thanks all.  What is the timeline that MP and any other  
missing ontology will be available in OBS?

Trish


On Apr 16, 2010, at 3:18 PM, Natasha Noy wrote:

> I just talked to Cherie: apparently, the latest version of MP had a  
> parsing error when the synchronization with OBS happened.
>
> Cherie will do two things:
> 1. Add the logic to her code that does the following: if OBS has  
> data for ontology X and the latest version of X in Bioportal has  
> status "Parsing error" or "Waiting to parse", keep the current OBS  
> data for X (currently, that data is deleted -- that's what happened  
> with MP).
> 2. Get a list of all ontologies that exist in Bioportal and have no  
> data in OBS. We will ask OPTRA to run synchronization for some or  
> all of  these ontologies ASAP.
>
> Natasha
>
>
> On Apr 16, 2010, at 2:07 PM, Rob Tirrell wrote:
>
>> Hi - could you take a look at this issue? Thanks!
>>
>> Rob Tirrell
>>
>>
>> ---------- Forwarded message ----------
>> From: Nigam Shah <nigam at stanford.edu>
>> Date: Fri, Apr 16, 2010 at 12:18
>> Subject: Re: RANSUM
>> To: Rob Tirrell <rpt at stanford.edu>
>>
>>
>> Yes ... there was a lot of data corruption in the /obs  
>> ontologies ... Cherie Youn is fixing that. Send a request to support at bioontology.org 
>>  asking for MP in the /obs. It should be easy to include it.
>>
>> cc "Natasha Noy" <noy at stanford.edu> as well.
>>
>> --Nigam.
>> PS: I am currently on leave, otherwise could have followed up myself.
>>
>> On Fri, Apr 16, 2010 at 12:06 PM, Rob Tirrell <rpt at stanford.edu>  
>> wrote:
>> hmmm... why would calls like rest.bioontology.org/bioportal/virtual/ 
>> rootpath/1025/MP:0000001?email=example at example.org be failing? Is  
>> it because MP is not in rest.bioontology.org/obs/ontologies all of  
>> the sudden (it is in the other ontologies list)?
>>
>> Rob Tirrell
>>
>>
>
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