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whetzel at stanford.edu
Fri Apr 16 15:25:08 PDT 2010
Sounds great, thanks all. What is the timeline that MP and any other
missing ontology will be available in OBS?
On Apr 16, 2010, at 3:18 PM, Natasha Noy wrote:
> I just talked to Cherie: apparently, the latest version of MP had a
> parsing error when the synchronization with OBS happened.
> Cherie will do two things:
> 1. Add the logic to her code that does the following: if OBS has
> data for ontology X and the latest version of X in Bioportal has
> status "Parsing error" or "Waiting to parse", keep the current OBS
> data for X (currently, that data is deleted -- that's what happened
> with MP).
> 2. Get a list of all ontologies that exist in Bioportal and have no
> data in OBS. We will ask OPTRA to run synchronization for some or
> all of these ontologies ASAP.
> On Apr 16, 2010, at 2:07 PM, Rob Tirrell wrote:
>> Hi - could you take a look at this issue? Thanks!
>> Rob Tirrell
>> ---------- Forwarded message ----------
>> From: Nigam Shah <nigam at stanford.edu>
>> Date: Fri, Apr 16, 2010 at 12:18
>> Subject: Re: RANSUM
>> To: Rob Tirrell <rpt at stanford.edu>
>> Yes ... there was a lot of data corruption in the /obs
>> ontologies ... Cherie Youn is fixing that. Send a request to support at bioontology.org
>> asking for MP in the /obs. It should be easy to include it.
>> cc "Natasha Noy" <noy at stanford.edu> as well.
>> PS: I am currently on leave, otherwise could have followed up myself.
>> On Fri, Apr 16, 2010 at 12:06 PM, Rob Tirrell <rpt at stanford.edu>
>> hmmm... why would calls like rest.bioontology.org/bioportal/virtual/
>> rootpath/1025/MP:0000001?email=example at example.org be failing? Is
>> it because MP is not in rest.bioontology.org/obs/ontologies all of
>> the sudden (it is in the other ontologies list)?
>> Rob Tirrell
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