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[bioontology-support] reg. bioportal webservices
spolavar at gmu.edu
Wed Apr 21 13:27:45 PDT 2010
Sure. Here is the attachment. Please let me know when it is ready.
However, it would be helpful if you can also let me know how I should
upload later versions subsequently. As I said, this is only the first
version and I will be adding more terms to it in the next versions while
testing. I really appreciate for your help and prompt response to this.
Trish Whetzel wrote:
> Hi Sridevi,
> We do have a Staging environment that we can test upload the file,
> however at the moment we are also in the process of pushing new code
> to this server so it may not be as accessible as usual. Would you mind
> sending me the file and I will coordinate with folks here to upload
> this to the Stage server?
> Once the final file is generated, it can be uploaded to BioPortal as a
> "view"  or subset of the NCBI taxonomy and after processing the
> ontology file, within a few hours, it will be accessible for use via
> the widgets and Web services.
>  http://bioportal.bioontology.org/ontologies/38802#views
> On Apr 21, 2010, at 11:23 AM, Sridevi Polavaram wrote:
>> Hi Trish,
>> I have made a lighter version of NCBI taxonomy ontology based on the
>> species we have in NeuroMorpho.Org and I am doing some quality
>> control testing on this. My question is, can I upload this new
>> ontology on to bioportal? but I prefer that it is not accessible to
>> the public, as it is not yet ready.
>> My second question is, irrespective of whether I can or cannot upload
>> my new obo ontology into a private space, how soon can I expect to
>> use the bioportal web services especially fill in a field in your
>> form aka auto completion feature and the viusalization feature
>> options that you have for the ontology widgets. I want to use my own
>> version of ontology for these two services. Please let me know how
>> much time should it take to do this, if at all possible.
> Trish Whetzel, PhD
> Outreach Coordinator
> The National Center for Biomedical Ontology
> Ph: 650-721-2378
> whetzel at stanford.edu <mailto:whetzel at stanford.edu>
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