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[bioontology-support] reg. bioportal webservices
spolavar at gmu.edu
Wed Apr 21 21:19:17 PDT 2010
I tried the auto-completion widget from the http://stage.bioontology.org/ontologies/42702#widgets
and was testing Example3 in the Fill in a field feature.
As per the instructions I have downloaded the form_complete.js, which looks very different from the one I got for the NCBI taxonomy widget.
Next, I have added the following line to my text box in the jsp page.
<input type="text" name="str" class="bp_form_complete-1453-name" size="50" onfocus="">
But when I execute my application, I don't get the names in the drop-down list anymore. Please, let me know how to fix this.
----- Original Message -----
From: Trish Whetzel <whetzel at stanford.edu>
Date: Wednesday, April 21, 2010 9:06 pm
Subject: Re: reg. bioportal webservices
> Hi Sridevi,
> The file can be viewed at: http://stage.bioontology.org/visualize/
> 42702. If you register for an account using the Stage server, we
> transfer 'ownership' of the ontology to your account and that will
> allow you to upload subsequent versions to the Stage server for
> as you develop the final version of your NCBI taxonomy subset.
> However, please do keep in mind that the Stage server may not
> be accessible.
> On Apr 21, 2010, at 1:27 PM, Sridevi Polavaram wrote:
> > Hi Trish,
> > Sure. Here is the attachment. Please let me know when it is
> > However, it would be helpful if you can also let me know how I
> > should upload later versions subsequently. As I said, this is
> > the first version and I will be adding more terms to it in the
> > versions while testing. I really appreciate for your help and
> > response to this.
> > Best regards,
> > Sridevi
> > Trish Whetzel wrote:
> >> Hi Sridevi,
> >> We do have a Staging environment that we can test upload the
> >> however at the moment we are also in the process of pushing new
> >> code to this server so it may not be as accessible as usual.
> >> you mind sending me the file and I will coordinate with folks
> >> to upload this to the Stage server?
> >> Once the final file is generated, it can be uploaded to
> >> as a "view"  or subset of the NCBI taxonomy and after
> >> the ontology file, within a few hours, it will be accessible for
> >> use via the widgets and Web services.
> >> Cheers,
> >> Trish
> >>  http://bioportal.bioontology.org/ontologies/38802#views
> >> On Apr 21, 2010, at 11:23 AM, Sridevi Polavaram wrote:
> >>> Hi Trish,
> >>> I have made a lighter version of NCBI taxonomy ontology based
> >>> the species we have in NeuroMorpho.Org and I am doing some
> >>> control testing on this. My question is, can I upload this new
> >>> ontology on to bioportal? but I prefer that it is not
> >>> to the public, as it is not yet ready.
> >>> My second question is, irrespective of whether I can or cannot
> >>> upload my new obo ontology into a private space, how soon can I
> >>> expect to use the bioportal web services especially fill in a
> >>> field in your form aka auto completion feature and the
> >>> viusalization feature options that you have for the ontology
> >>> widgets. I want to use my own version of ontology for these two
> >>> services. Please let me know how much time should it take to do
> >>> this, if at all possible.
> >>> Thanks
> >>> Sridevi
> >> Trish Whetzel, PhD
> >> Outreach Coordinator
> >> The National Center for Biomedical Ontology
> >> Ph: 650-721-2378
> >> whetzel at stanford.edu <mailto:whetzel at stanford.edu>
> >> http://www.bioontology.org
> > <NCBI_NMO_taxonomyv1.0.obo>
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