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[bioontology-support] updates to designer wizard--units

Trish Whetzel whetzel at stanford.edu
Mon Apr 26 00:15:53 PDT 2010


The Web services and example output are listed here: http://www.bioontology.org/wiki/index.php/NCBO_REST_services 
.  Eamonn provided us with an XML Schema for the term and hierarchy  
web services: http://www.bioontology.org/wiki/index.php/NCBO_REST_services#XML_Schema_Definitions_for_the_REST_services 
.

Trish



On Apr 23, 2010, at 3:45 PM, Michael Miller wrote:

> hi trish,
>
> thanks, that's along the lines i was thinking.  now the hope is that  
> the
> information entered into the MAGE-TAB documents is enough to use the
> services.
>
> the XML return format looks nice, is there documentation and/or a
> XMLSchema describing it?
>
> cheers,
> michael
>
>> -----Original Message-----
>> From: Trish Whetzel [mailto:whetzel at stanford.edu]
>> Sent: Tuesday, April 20, 2010 2:40 PM
>> To: Michael Miller
>> Cc: annotare-dev at googlegroups.com; support at bioontology.org; mdmiller
>> Subject: Re: [bioontology-support] updates to designer wizard--units
>>
>> Hi Michael,
>>
>> We are working to provide a SPARQL endpoint. In addition, depending  
>> on
>> what information you have about a term, the application can  
>> generate a
>> call to the Term Web service
>> (http://www.bioontology.org/wiki/index.php/NCBO_REST_services#Term_serv
>> ices
>> ), where the definition can be parsed out OR generate a link to the
>> BioPortal 'visualize' page. All ontologies can be accessed via:
>> http://purl.bioontology.org/ontology/OntologyAbbreviation/TermId
>> . For example, http://purl.bioontology.org/ontology/EFO/EFO_0002029.
>>
>> Trish
>>
>>
>> On Apr 20, 2010, at 12:19 PM, Michael Miller wrote:
>>
>>> hi trish,
>>>
>>> another point here on my use case, is that it is for a reader of the
>>> MAGE-TAB document, not an annotator.  the tools you point out are
>>> great
>>> for an annotator but a reader simply wants the info quickly and
>>> easily.
>>>
>>> if the reader wanted to understand more about a characteristic, one
>>> click
>>> should bring up a page with the full definition.
>>>
>>> so ideally the application can put together a sparql query or a URL
>>> from
>>> the value in the characteristic column and its term source ref to
>>> get this
>>> information then display it to the reader.
>>>
>>> i don't see that the current usage in MAGE-TAB supports this use  
>>> case
>>> easily.
>>>
>>> cheers,
>>> michael
>>>
>>>> -----Original Message-----
>>>> From: annotare-dev at googlegroups.com [mailto:annotare-
>>>> dev at googlegroups.com] On Behalf Of Trish Whetzel
>>>> Sent: Tuesday, April 13, 2010 9:16 AM
>>>> To: mdmiller
>>>> Cc: Junmin Liu; annotare-dev at googlegroups.com;
>>>> support at bioontology.org
>>>> Subject: Re: [bioontology-support] updates to designer wizard-- 
>>>> units
>>>>
>>>> The BioPortal Search takes both term names and IDs as input. The
>>>> term-
>>>> selection widget
>>>> (http://bioportal.bioontology.org/ontologies/42488#widgets
>>>> ) uses the Search web service and has the option to return the term
>>>> name, ID, or URI. There is javascript available for download on the
>>>> widgets page if this widget suits your needs.
>>>>
>>>> Trish
>>>>
>>>>
>>>> On Apr 13, 2010, at 6:57 AM, mdmiller wrote:
>>>>
>>>>> hi junmin,
>>>>>
>>>>> that sounds good, i think you can even search for 'time unit' in
>>>>> EFO, get UO:0000003, then look that up.
>>>>>
>>>>> cheers,
>>>>> michael
>>>>> ----- Original Message ----- From: "Junmin Liu"
>>>>> <junmin at pcbi.upenn.edu>
>>>>> To: <annotare-dev at googlegroups.com>
>>>>> Cc: "mdmiller" <mdmiller53 at comcast.net>; <support at bioontology.org>
>>>>> Sent: Monday, April 12, 2010 7:00 PM
>>>>> Subject: Re: updates to designer wizard--units
>>>>>
>>>>>
>>>>>> Hi, Trish and Michael,
>>>>>> I can use the onotlogy search tool we have built into annotare on
>>>>>> top of bioportal web service to search the term like UO:0000003.
>>>>>>
>>>>>> it gave me:
>>>>>> <searchResultList>
>>>>>>        <searchBean>
>>>>>>          <ontologyVersionId>42471</ontologyVersionId>
>>>>>>          <ontologyId>1112</ontologyId>
>>>>>>          <ontologyDisplayLabel>Units of measurement</
>>>>>> ontologyDisplayLabel>
>>>>>>          <recordType>RECORD_TYPE_CONCEPT_ID</recordType>
>>>>>>          <conceptId>UO:0000003</conceptId>
>>>>>>          <conceptIdShort>UO:0000003</conceptIdShort>
>>>>>>          <preferredName>time unit</preferredName>
>>>>>>          <contents>UO:0000003</contents>
>>>>>>        </searchBean>
>>>>>> .....
>>>>>>
>>>>>> So we have the function already, just a matter about how to link
>> it
>>>>>> up inside the application.
>>>>>>
>>>>>> Thanks,
>>>>>> --junmin
>>>>>>
>>>>>>
>>>>>> On Sat, 10 Apr 2010, Trish Whetzel wrote:
>>>>>>
>>>>>>> Hi Michael,
>>>>>>>
>>>>>>> There is a term-selection widget that BioPortal provides that
>>>>>>> given a term name such as 'age', can return either the URI, term
>>>>>>> id or preferred name for the term. The widgets page for EFO is
>> at:
>>>> http://bioportal.bioontology.org/ontologies/42488#widgets
>>>>>>> . The BioPortal Web services can also be used to extract term
>>>>>>> definitions to present back to the user.
>>>>>>>
>>>>>>> The Unit Ontology does exist as a separate ontology file, e.g.
>>>> http://purl.bioontology.org/ontology/UO
>>>>>>> . However, it seems as though in the broader context of sources
>>>>>>> for unit terms this ontology is not mentioned. There is an  
>>>>>>> effort
>>>>>>> within the Ontolog group to work on a Quantity and Unit of
>> Measure
>>>>>>> Ontology-based Standard (http://ontolog.cim3.net/cgi-bin/ 
>>>>>>> wiki.pl?
>>>>>>> UoM).
>>>>>>>
>>>>>>> Trish
>>>>>>>
>>>>>>>
>>>>>>> On Apr 10, 2010, at 9:00 AM, mdmiller wrote:
>>>>>>>
>>>>>>>> hi all,
>>>>>>>>
>>>>>>>> thanks for all the feedback, i'll use the EFO references.
>>>>>>>>
>>>>>>>> one question and more general comment, tho, referencing the  
>>>>>>>> term
>>>>>>>> in a MAGE-TAB document seems incomplete.  there would be two
>>>>>>>> approaches, the one i see in general is to use the label, for
>>>>>>>> instance 'time unit'  and as the term source ref use EFO, which
>>>>>>>> in the IDF has the URI (which is what i'll do).  but one nice
>>>>>>>> feature is to be able to "link" to the definition
>>>>>>>> programmatically, which this wouldn't allow.  from what's in  
>>>>>>>> the
>>>>>>>> MAGE-TAB one would have to manually open up EFO in a browser,
>>>>>>>> find 'time unit', go to OBO and use UO:0000003 to look it up.
>>>>>>>> but having UO:0000003 as the value in MAGE-TAB is quite
>>>>>>>> unfriendly for readability. so maybe for v2 of MAGE-TAB we  
>>>>>>>> allow
>>>>>>>> a URN field for columns that can have terms from an ontology.
>>>>>>>> granted, a bench scientist will probably not use that column  
>>>>>>>> but
>>>>>>>> export applications at places like ArrayExpress could certainly
>>>>>>>> add that.
>>>>>>>>
>>>>>>>> as a side, i went to check up more on the UNIT ONTOLOGY, i
>> really
>>>>>>>> didn't find much.
>>>>>>>>
>>>>>>>> found a great link that discusses the issue of units and
>>>>>>>> ontologies and it mentions SI Units but not the Unit Ontology
>> (as
>>>>>>>> far as i can tell, i might have missed it).
>>>>>>>> the discussion is at http://groups.google.com/group/publishing-
>>>> statistical-data/browse_thread/thread/80ca23044b6f1ea4
>>>>>>>> and richard cyganiak's answer is very detailed and fairly  
>>>>>>>> recent
>>>>>>>> (march 10th).
>>>>>>>>
>>>>>>>> at the OBO site, UO is listed as part of PATO but the PATO wiki
>>>>>>>> page doesn't seem to have much information on the units
>>>>>>>> ontology.  all though OBO is a reputable site, there are other
>>>>>>>> unit ontology efforts under way that do have documentation on
>>>>>>>> their process, for instance the morfeo-project:
>>>>>>>>
>>>>>>>> http://forge.morfeo-
>>>> project.org/wiki_en/index.php/Units_of_measurement_ontology
>>>>>>>>
>>>>>>>> cheers,
>>>>>>>> michael
>>>>>>>>
>>>>>>>> ----- Original Message ----- From: "James Malone"
>>>>>>>> <malone at ebi.ac.uk>
>>>>>>>> To: "helen parkinson" <helen.parkinson at gmail.com>
>>>>>>>> Cc: <annotare-dev at googlegroups.com>
>>>>>>>> Sent: Friday, April 09, 2010 6:33 AM
>>>>>>>> Subject: Re: updates to designer wizard
>>>>>>>>
>>>>>>>>
>>>>>>>>> Yep, all in EFO, imported from Unit Ontology which is the
>>>>>>>>> community authority and based on SI units.
>>>>>>>>>
>>>>>>>>> James
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> helen parkinson wrote:
>>>>>>>>>> the units are all in EFO, where they have been imported from
>>>>>>>>>> the units ontology, which is the authoritative source afaik -
>>>>>>>>>>
>>>>>>>>>> On Thu, Apr 8, 2010 at 9:21 PM, Joe White
>>>> <jwhite at jimmy.harvard.edu
>>>>>>>>>> <mailto:jwhite at jimmy.harvard.edu>> wrote:
>>>>>>>>>>
>>>>>>>>>> Hi Michael,
>>>>>>>>>>
>>>>>>>>>> The units are probably in the EFO.  If not then there's the
>>>>>>>>>> PATO
>>>>>>>>>> Unit Ontology (if I remember the name correctly).
>>>>>>>>>> Maybe this is helpful--if not obvious:
>>>>>>>>>>
>>>>>>>>>> "age":  TimeUnit
>>>>>>>>>> "dose",  ConcentrationUnit
>>>>>>>>>> "irradiate", ?? (could be RAD or rem, but I don't think there
>>>>>>>>>> was
>>>>>>>>>> a unit class for this in MAGE)
>>>>>>>>>> "temperature", TemperatureUnit (depending on source, it could
>>>>>>>>>> be
>>>>>>>>>> either deg C or deg F)
>>>>>>>>>> "time",  TimeUnit
>>>>>>>>>>
>>>>>>>>>> They are based on the old MAGE Unit classes though.
>>>>>>>>>> Cheers,
>>>>>>>>>> Joe
>>>>>>>>>>
>>>>>>>>>> Ravi Shankar wrote:
>>>>>>>>>>
>>>>>>>>>>     No, she didn't.
>>>>>>>>>>
>>>>>>>>>>     On Apr 8, 2010, at 12:09 PM, Michael Miller wrote:
>>>>>>>>>>
>>>>>>>>>>         hi ravi,
>>>>>>>>>>
>>>>>>>>>>          excellent, this will help.  helen didn't include
>>>>>>>>>> what type
>>>>>>>>>>         of units somewhere?
>>>>>>>>>>
>>>>>>>>>>          cheers,
>>>>>>>>>>         michael
>>>>>>>>>>
>>>>>>>>>>          *From:* annotare-dev at googlegroups.com
>>>>>>>>>>         <mailto:annotare-dev at googlegroups.com>
>>>>>>>>>>         <mailto:annotare-dev at googlegroups.com
>>>>>>>>>>         <mailto:annotare-dev at googlegroups.com>>
>>>>>>>>>>         [mailto:annotare-dev at googlegroups.com
>>>>>>>>>>         <mailto:annotare-dev at googlegroups.com>
>>>>>>>>>>         <mailto:annotare-dev at googlegroups.com
>>>>>>>>>>         <mailto:annotare-dev at googlegroups.com>>] *On Behalf
>> Of
>>>>>>>>>>         *Ravi Shankar
>>>>>>>>>>
>>>>>>>>>>         *Sent:* Thursday, April 08, 2010 12:05 PM
>>>>>>>>>>         *To:* annotare-dev at googlegroups.com
>>>>>>>>>>         <mailto:annotare-dev at googlegroups.com>
>>>>>>>>>>         <mailto:annotare-dev at googlegroups.com
>>>>>>>>>>         <mailto:annotare-dev at googlegroups.com>>
>>>>>>>>>>         *Subject:* Re: updates to designer wizard
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>          Hi Michael,
>>>>>>>>>>         Here is are the lists that Helen gave me (a long
>> while
>>>>>>>>>>         ago) that I am using for this purpose. Maybe, they
>>>>>>>>>> need to
>>>>>>>>>>         be upgraded:
>>>>>>>>>>
>>>>>>>>>>          characteristicsTypes [ "age", "cell line", "cell
>>>>>>>>>> type",
>>>>>>>>>>         "clinical history", "clinical treatment", "cultivar",
>>>>>>>>>>         "development stage", "disease location", "disease
>>>>>>>>>>         staging", "disease state", "ecology type",
>>>>>>>>>> "enviromental
>>>>>>>>>>         history", "enviromental stress", "family history",
>>>>>>>>>>         "generation", "genetic modification", "genotype",
>>>>>>>>>> "growth
>>>>>>>>>>         condition", "individual", "observation", "organism",
>>>>>>>>>>         "organism part", "performer", "phenotype",
>>>>>>>>>> "population",
>>>>>>>>>>         "RNAi", "sex", "source provider", "strain or line"];
>>>>>>>>>>
>>>>>>>>>>          factorTypes ["age", "cell line", "cell type",
>>>>>>>>>> "clinical
>>>>>>>>>>         history", "clinical treatment", "compound",
>>>> "cultivar",
>>>>>>>>>>         "development stage", "disease location", "disease
>>>>>>>>>>         staging", "disease state", "dose", "ecology type",
>>>>>>>>>>         "enviromental history", "enviromental stress",
>> "family
>>>>>>>>>>         history", "generation", "genetic modification",
>>>>>>>>>>         "genotype", "growth condition", "immunoprecipitate",
>>>>>>>>>>         "individual", "infect", "irradiate", "nutrients",
>>>>>>>>>>         "observation", "organism", "organism part",
>>>>>>>>>> "performer",
>>>>>>>>>>         "phenotype", "population", "protocol", "replicate",
>>>>>>>>>>         "RNAi", "sex", "source provider", "strain or line",
>>>>>>>>>>         "temperature", "time"];
>>>>>>>>>>
>>>>>>>>>>          factorTypesWithUnits ["age", "dose", "irradiate",
>>>>>>>>>>         "temperature", "time"];
>>>>>>>>>>
>>>>>>>>>>          factorTypesWithOptionalUnits ["clinical treatment",
>>>>>>>>>>         "enviromental stress", "growth condition",
>>>> "nutrients",
>>>>>>>>>>         "phenotype"];
>>>>>>>>>>
>>>>>>>>>>          factorTypesWithNoUnits ["cell line", "cell type",
>>>>>>>>>>         "clinical history", "clinical information",
>>>> "compound",
>>>>>>>>>>         "developmental stage", "disease staging", "disease
>>>>>>>>>> state",
>>>>>>>>>>         "genetic modification", "genotype",
>>>>>>>>>> "immunoprecipitate",
>>>>>>>>>>         "individual", "infect", "organism", "organism part",
>>>>>>>>>>         "protocol", "sex", "strain or line"];
>>>>>>>>>>
>>>>>>>>>>          On Apr 8, 2010, at 6:40 AM, mdmiller wrote:
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>         hi rashmi,
>>>>>>>>>>
>>>>>>>>>>          thanks for the update.  i've included the file that
>>>>>>>>>> has
>>>>>>>>>>         all the tables that drive the backend, the category
>>>>>>>>>> table
>>>>>>>>>>         which translates to characteristics, organism,
>>>>>>>>>> species and
>>>>>>>>>>         designs, which translates to experimental type, are
>>>>>>>>>>         directly from ArrayExpress.  modifying the tables
>> that
>>>>>>>>>>         associate organism and categories and designs and
>>>>>>>>>>         categories will change the behavior of what the code
>>>>>>>>>> will
>>>>>>>>>>         generate.
>>>>>>>>>>
>>>>>>>>>>          none of the changes require the Design Wizard UI be
>>>>>>>>>>         changed, except for perhaps a minor change.
>>>>>>>>>>
>>>>>>>>>>          "158: Default characteristic from template has no
>>>>>>>>>> Unit column"
>>>>>>>>>>
>>>>>>>>>>          i will try and implement this over the weekend, i
>>>> have
>>>>>>>>>>         guests so may have trouble getting it done.  it
>>>>>>>>>> should be
>>>>>>>>>>         clear what characteristics have what units but see
>>>>>>>>>> below
>>>>>>>>>>         for what i propose.
>>>>>>>>>>
>>>>>>>>>>          "120: Design Wizard should ask for experimental
>>>> design
>>>>>>>>>>         type and not name."
>>>>>>>>>>
>>>>>>>>>>          issue 66: "Experiment Design Name doesn't default to
>>>>>>>>>> type"
>>>>>>>>>>         is related to this and is marked as fixed--basically,
>>>>>>>>>> this
>>>>>>>>>>         means if someone only selects a type, the name will
>>>>>>>>>>         default to the type.
>>>>>>>>>>
>>>>>>>>>>          if i remember right, both values are asked for,
>>>>>>>>>> would it
>>>>>>>>>>         be better to have the type column first with the name
>>>>>>>>>>         column second?  or the UI might have changed since i
>>>>>>>>>> last
>>>>>>>>>>         had a chance to take a look.
>>>>>>>>>>
>>>>>>>>>>          "149: SDRF should be located via reference in IDF
>>>>>>>>>> file."
>>>>>>>>>>
>>>>>>>>>>          yes, in many discussions, this is always what has
>>>> been
>>>>>>>>>>         agreed on.  in addition, if no SDRF file is listed,
>> no
>>>>>>>>>>         attempt to find a default should be done.
>>>>>>>>>>
>>>>>>>>>>          "Issue 125
>>>>>>>>>>         <http://code.google.com/p/annotare/issues/detail?
>>>>>>>>>> id=125>:
>>>>>>>>>>
>>>>>>>>>>                Restrict array design selection based on
>>>> vendor"
>>>>>>>>>>
>>>>>>>>>>          this is a duplicate of issue 61 and is marked
>>>>>>>>>>         critical,which is good.  this is why the design
>> wizard
>>>>>>>>>>         exists--to make it easy for the user to select what
>>>>>>>>>> they
>>>>>>>>>>         want.  if the choices aren't limited then the user is
>>>>>>>>>>         faced with many, many irrelevant choices in the
>>>>>>>>>> dropdown.
>>>>>>>>>>          they should also be filtered by the species.
>>>>>>>>>>
>>>>>>>>>>          cheers,
>>>>>>>>>>         michael
>>>>>>>>>>
>>>>>>>>>>          here's what i see, not many characteristics will
>> have
>>>>>>>>>>         units (and Time Units is listed as a characteristics
>>>>>>>>>> which
>>>>>>>>>>         i'll probably remove).  the choices for units are
>>>>>>>>>>         TimeUnit, DistanceUnit, TemperatureUnit,
>> QuantityUnit,
>>>>>>>>>>         MassUnit, VolumeUnit, and ConcentrationUnit:
>>>>>>>>>>
>>>>>>>>>>          display_label
>>>>>>>>>>                unit
>>>>>>>>>>         Age
>>>>>>>>>>                TimeUnit
>>>>>>>>>>         Organism part
>>>>>>>>>>                Disease state
>>>>>>>>>>                Cell line
>>>>>>>>>>                Cell type
>>>>>>>>>>                Developmental stage
>>>>>>>>>>                Disease staging
>>>>>>>>>>                Environmental history
>>>>>>>>>>                Genetic modification
>>>>>>>>>>                Histology
>>>>>>>>>>                Individual
>>>>>>>>>>                Genotype
>>>>>>>>>>                Alive or dead?
>>>>>>>>>>                Phenotype
>>>>>>>>>>                Sex
>>>>>>>>>>                Strain or line
>>>>>>>>>>                Targeted cell type
>>>>>>>>>>                Tumor grading
>>>>>>>>>>                Ecotype
>>>>>>>>>>                Clinical history
>>>>>>>>>>                Time
>>>>>>>>>>                TimeUnit
>>>>>>>>>>         Compound
>>>>>>>>>>                Dose
>>>>>>>>>>                VolumeUnit
>>>>>>>>>>         Species
>>>>>>>>>>                Time Units
>>>>>>>>>>                Initial Time Point
>>>>>>>>>>                BioSource Provider
>>>>>>>>>>                BioSource Type
>>>>>>>>>>                fraction
>>>>>>>>>>                GrowthCondition
>>>>>>>>>>                RNAi
>>>>>>>>>>                Growth condition
>>>>>>>>>>
>>>>>>>>>>            ----- Original Message -----
>>>>>>>>>>            *From:* Rashmi Srinivasa
>>>>>>>>>>         <mailto:rsrinivasa at 5amsolutions.com
>>>>>>>>>>         <mailto:rsrinivasa at 5amsolutions.com>>
>>>>>>>>>>            *To:* annotare-dev at googlegroups.com
>>>>>>>>>>         <mailto:annotare-dev at googlegroups.com>
>>>>>>>>>>            <mailto:annotare-dev at googlegroups.com
>>>>>>>>>>         <mailto:annotare-dev at googlegroups.com>>
>>>>>>>>>>            *Sent:* Tuesday, April 06, 2010 1:40 PM
>>>>>>>>>>            *Subject:* Fixes I'd like to see in v1.0
>>>>>>>>>>
>>>>>>>>>>            Hi everyone,
>>>>>>>>>>
>>>>>>>>>>            Out of the issues I entered, these are the ones I
>>>> am
>>>>>>>>>>         hoping to
>>>>>>>>>>            see fixed in v1.0:
>>>>>>>>>>            120
>>>>>>>>>>
>>>> <http://code.google.com/p/annotare/issues/detail?id=120
>>>>>>>>>>> :
>>>>>>>>>>         Design
>>>>>>>>>>
>>>>>>>>>>            Wizard should ask for experimental design type and
>>>>>>>>>> not
>>>>>>>>>>         name.
>>>>>>>>>>            149
>>>>>>>>>>
>>>> <http://code.google.com/p/annotare/issues/detail?id=149
>>>>>>>>>>> :
>>>>>>>>>>         SDRF
>>>>>>>>>>
>>>>>>>>>>            should be located via reference in IDF file.
>>>>>>>>>>            155
>>>>>>>>>>
>>>> <http://code.google.com/p/annotare/issues/detail?id=155
>>>>>>>>>>> :
>>>>>>>>>>         Ontology
>>>>>>>>>>
>>>>>>>>>>            Search returns incorrect results for the MGED
>>>>>>>>>> Ontology.
>>>>>>>>>>            158
>>>>>>>>>>
>>>> <http://code.google.com/p/annotare/issues/detail?id=158
>>>>>>>>>>> :
>>>>>>>>>>         Default
>>>>>>>>>>
>>>>>>>>>>            characteristic from template has no Unit column.
>>>>>>>>>>            159
>>>>>>>>>>
>>>> <http://code.google.com/p/annotare/issues/detail?id=159
>>>>>>>>>>> :
>>>>>>>>>>         Cannot
>>>>>>>>>>
>>>>>>>>>>            enter Unit columns for characteristics in SDRF
>>>>>>>>>> Column
>>>>>>>>>>         Designer.
>>>>>>>>>>
>>>>>>>>>>            Thanks!
>>>>>>>>>>            Rashmi
>>>>>>>>>>            ---
>>>>>>>>>>            Rashmi Srinivasa, Ph.D.
>>>>>>>>>>            www.5amsolutions.com <http://www.5amsolutions.com>
>>>>>>>>>>         <http://www.5amsolutions.com> | Software for
>>>>>>>>>>            Life (TM)
>>>>>>>>>>            rsrinivasa at 5amsolutions.com
>>>>>>>>>>         <mailto:rsrinivasa at 5amsolutions.com>
>>>>>>>>>>         <mailto:rsrinivasa at 5amsolutions.com
>>>>>>>>>>         <mailto:rsrinivasa at 5amsolutions.com>>
>>>>>>>>>>
>>>>>>>>>>            434 825 4003
>>>>>>>>>>
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>>>>>>>>>>         <tables_2009_11_13.txt>
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>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> --
>>>>>>>>>> Helen Parkinson
>>>>>>>>>> Skype:helen.parkinson.ebi
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> --
>>>>>>>>> European Bioinformatics Institute, Wellcome Trust Genome
>> Campus,
>>>>>>>>> Hinxton, Cambridge, CB10 1SD, United Kingdom
>>>>>>>>> Tel: + 44 (0) 1223 494 676
>>>>>>>>> Fax: + 44 (0) 1223 492 468
>>>>>>>>> --
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>>>>>>>>> For more options, visit this group at
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>>>>>>>>> .
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>
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>>>>>>> .
>>>>>>>
>>>>>
>>>>>
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