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[bioontology-support] Bioportal NCIT Import problem
whetzel at stanford.edu
Tue Apr 27 16:50:03 PDT 2010
That is really good news to hear that the import speed is improved
using the getAllTerms Web service. In the case for NCIt, we recently
found that there is a duplicate listing (based on NCIt also now being
listed on the OBO Foundry web page) and I will remove this duplicate
entry. In addition, we will also have some improved QA to more quickly
check for this case.
However, there is also a version of the NCIt with version identifier
'42693' that is local to BioPortal and therefore the following call
One thing that you can do to prevent trying to call a 'remote'
ontology is if you are using the call:
to get a list of the ontologies, parse our the <statusId> field and
display only those that have the value '3', which means that the
ontology is local to BioPortal. If you don't use this call, perhaps
we can explore adding a more meaningful error message in the output of
the getAllTerms web service.
On Apr 27, 2010, at 3:52 PM, Chavan, Girish wrote:
> Hi All,
> We have our new import code almost ready. We tested it with GO, FMA
> and Radlex, and the import speed is very fast. We have having an
> error downloading from NCIT though.
> Here is the service call and error:
> Server returned HTTP response code: 500 for URL:
> Could you shed some light as to what might be going on?
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