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[bioontology-support] Feedback

Paul R Alexander palexander at stanford.edu
Thu Apr 29 11:03:31 PDT 2010


I wasn't sure why they had no root nodes, especially as some of them 
have older versions which work correctly. If the ontologies just lack 
root nodes, I think we should add them to the "can't explore" list, 
which is maintained in the bioportal config options.

Paul

On 4/28/10 8:38 PM, Natasha Noy wrote:
> So, for all the cases besides HL7, there are no root nodes, basically. 
> The same is true for OBO relationships. We don't have an "explore" 
> link there. Is that disabled manually? Should we disable it for these 
> ontologies as well? Should we check for 0 roots and display some 
> meaningful message?
>
> Natasha
>
>
> On Apr 28, 2010, at 4:18 PM, Paul R Alexander wrote:
>
>> Most of these have empty results for subclasses at the root node so 
>> there's nothing to visualize. Not sure if this is due to an error in 
>> parsing or an error in returning results for root.
>>     • HL7 (42545): Known issue
>>     • TOK (42176): Problem displaying the root node from the REST 
>> service
>>>> http://rest.bioontology.org/bioportal/concepts/42176?conceptid=root
>>     • Cancer Research and Management ACGT Master Ontology (42497): 
>> Problem displaying the root node from the REST service
>>>> http://rest.bioontology.org/bioportal/concepts/42497?conceptid=root
>>     • ICPC-2 PLUS (42297): Problem displaying the root node from the 
>> REST service
>>>> http://rest.bioontology.org/bioportal/concepts/42297?conceptid=root
>> I don't see how it would be possible for Safari to display some of 
>> these, so I don't think that's an issue.
>>
>> Paul
>>
>> On 4/28/10 4:07 PM, Trish Whetzel wrote:
>>>
>>> Yes, HL7 is due to a different problem and will be resolved later 
>>> today following production push of code.
>>>
>>> Trish
>>>
>>>
>>> On Apr 28, 2010, at 4:02 PM, Anna Tordai wrote:
>>>
>>>> Same applies for HL7 on both firefox and safari:
>>>> http://bioportal.bioontology.org/visualize/42545
>>>>
>>>> On Apr 28, 2010, at 3:54 PM, Natasha Noy wrote:
>>>>
>>>>> It doesn't work for me in either firefox or safari
>>>>>
>>>>> Natasha
>>>>>
>>>>>
>>>>> On Apr 28, 2010, at 3:50 PM, Trish Whetzel wrote:
>>>>>
>>>>>> What browser are you using? I just tested with Firefox and Safari 
>>>>>> and had errors with Firefox, but the same link worked in Safari. 
>>>>>> Paul did not experience the same error.
>>>>>>
>>>>>> Trish
>>>>>>
>>>>>>
>>>>>> On Apr 28, 2010, at 3:48 PM, Anna Tordai wrote:
>>>>>>
>>>>>>> Same thing happened with TOK ontology.
>>>>>>>
>>>>>>> http://bioportal.bioontology.org/visualize/42176
>>>>>>>
>>>>>>>
>>>>>>> On Apr 28, 2010, at 3:28 PM, Trish Whetzel wrote:
>>>>>>>
>>>>>>>> Hi Anna,
>>>>>>>>
>>>>>>>> Thanks for reporting this error. Paul do you know why this is 
>>>>>>>> happening?
>>>>>>>>
>>>>>>>> Trish
>>>>>>>>
>>>>>>>>
>>>>>>>> On Apr 28, 2010, at 2:58 PM, admin at bioontology.org wrote:
>>>>>>>>
>>>>>>>>> Name : Anna Tordai
>>>>>>>>>
>>>>>>>>> Email : atordai at cs.vu.nl
>>>>>>>>>
>>>>>>>>> Comment:
>>>>>>>>> When trying to explore the Master Drug Database the following 
>>>>>>>>> error came up:
>>>>>>>>> "The page you are looking for wasn't found. Please try again."
>>>>>>>>>
>>>>>>>>> The page link:
>>>>>>>>> http://bioportal.bioontology.org/visualize/42284
>>>>>>>>> _______________________________________________
>>>>>>>>> bioontology-support mailing list
>>>>>>>>> bioontology-support at lists.stanford.edu
>>>>>>>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>>>>>>>
>>>>>>>
>>>>>>
>>>>>> Trish Whetzel, PhD
>>>>>> Outreach Coordinator
>>>>>> The National Center for Biomedical Ontology
>>>>>> Ph: 650-721-2378
>>>>>> whetzel at stanford.edu
>>>>>> http://www.bioontology.org
>>>>>>
>>>>>>
>>>>>>
>>>>>> _______________________________________________
>>>>>> bioontology-support mailing list
>>>>>> bioontology-support at lists.stanford.edu
>>>>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>>>>
>>>>
>>>
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>



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