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[bioontology-support] NCBO annotator web service

Trish Whetzel whetzel at stanford.edu
Tue Aug 3 19:16:49 PDT 2010


I'm not aware of anyone using the Annotator Web service in Python,  
however attached is an Annotator client example in Python.

Trish

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On Aug 3, 2010, at 1:48 PM, Lorena Carlo wrote:

> Hi Trish,
>
> Thanks for your email. I would like to know if there is people in  
> the community using python and the annotator web service?. If so can  
> you redirect me to the resources that will help me to use this web  
> service in python?. Thanks!.
>
> Best regards,
> Lorena
>
> Trish Whetzel wrote:
>> Hi Lorena,
>> Let me know if you have any questions about accessing the Annotator  
>> via the REST Web service. Also, if you are able to share  
>> information on your use case for the Annotator with our Google  
>> group that would be wonderful: http://groups.google.com/group/annotator-discuss 
>> .
>>
>> Best regards,
>> Trish
>>
>>
>>
>> On Aug 3, 2010, at 12:45 PM, Clement Marie Jonquet wrote:
>>
>>> Dear Lorena,
>>>
>>> There is unfortunately no SOAP web services for the Annotator.  
>>> This is
>>> only deployed as a REST service and HTML, Java, Perl and Ruby on  
>>> rails
>>> client are available:
>>> http://www.bioontology.org/wiki/index.php/Annotator_Web_service
>>>
>>> Hope you will still use it.
>>> We will let you know if this situation change in the future.
>>>
>>> Please follow up conversation with Trish Whetzel (CC), as I will  
>>> not be at
>>> Stanford any time soon.
>>>
>>> Clement
>>>
>>> --------------------------------------------------------------------------
>>> -------------------------
>>> Dr. Clement JONQUET  -  PhD in Informatics  -  Postdoctoral Research
>>> Fellow
>>>
>>> jonquet at stanford.edu <mailto:jonquet at stanford.edu>
>>> http://www.stanford.edu/~jonquet
>>>
>>> Stanford Center for Biomedical Informatics Research (BMIR)
>>> Medical School Office Building, Room X-215
>>> 251 Campus Drive
>>> Stanford, CA 94305-5479
>>> USA
>>>
>>> Tel:        +1 650 724-0388
>>> Fax:       +1  650 725-7944
>>> Skype:  clementpro
>>> http://bmir.stanford.edu/
>>> --------------------------------------------------------------------------
>>> -------------------------
>>>
>>>
>>>
>>> -----Original Message-----
>>> From: Lorena Carlo [mailto:lorena.carlo at dbmi.columbia.edu]
>>> Sent: Tuesday, August 03, 2010 11:38 AM
>>> To: jonquet at stanford.edu
>>> Subject: NCBO annotator web service
>>>
>>> Dear Clement Jonquet,
>>>
>>> I am interested in using the NCBO annotator  web service in an  
>>> python
>>> application. I don't find the web service wsdl. Can you send me  
>>> the wsdl
>>> URL?.  Thanks.
>>>
>>> Best regards,
>>> Lorena Carlo
>>> PhD student in Biomedical Informatics
>>> Columbia University
>>
>> Trish Whetzel, PhD
>> Outreach Coordinator
>> The National Center for Biomedical Ontology
>> Ph: 650-721-2378
>> whetzel at stanford.edu <mailto:whetzel at stanford.edu>
>> http://www.bioontology.org
>>
>>
>



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