Search Mailing List Archives
[bioontology-support] reg. bioportal webservices
whetzel at stanford.edu
Tue Aug 10 16:09:11 PDT 2010
Thanks for updating the file. All looks well from BioPortal.
On Aug 10, 2010, at 10:47 AM, Sridevi Polavaram wrote:
> Hi Trish:
> Yes, there is a minor bug in the file. Also, this time I used
> protege 4.0 to view the OBO tree instead of OBO-Edit. Seems like the
> new protege 4.0 obo parser is more robust to these minor errors.
> Next time around I will make sure to open it in OBO-Edit before
> uploading on bioportal.
> I have uploaded the new version onto the server now and it is
> parsing. Hopefully, it should be fine this time!
> Thanks a lot,
> Trish Whetzel wrote:
>> Hi Sridevi,
>> Are you able to open the ontology file in OBO-Edit? I was not able
>> to open the file in OBO-Edit and it opened only with warnings in
>> OBO-Edit 2. After opening in OBO-Edit 2, the hierarchy did not
>> look correct. See attached screenshots.
>> Can you send a screenshot of how you expect the root level of the
>> hierarchy to look from OBO-Edit?
>> On Aug 10, 2010, at 8:44 AM, Trish Whetzel wrote:
>>> The problem may be due to the format for the view being listed as
>>> OWL instead of OBO. I'll update this and see if that resolves the
>>> On Aug 10, 2010, at 7:16 AM, Sridevi Polavaram wrote:
>>>> Hi Trish and Paul:
>>>> I have uploaded a new version of NeuroMorpho.Org species ontology
>>>> onto bioportal yesterday, today when I checked, it seemed to be
>>>> ready, but when I clicked on explore button it is giving me a
>>>> page not found error.
>>>> Can you please check on this.
>>>> Thanks much!
>>> bioontology-support mailing list
>>> bioontology-support at lists.stanford.edu
More information about the bioontology-support