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[bioontology-support] LOINC Update on BioPortal

Trish Whetzel whetzel at stanford.edu
Wed Aug 11 13:54:27 PDT 2010


Perfect timing. Rob, let me introduce you to Natasha Noy, who I  
mentioned yesterday and can help you with your questions about Web  
Protege.

Trish


On Aug 11, 2010, at 1:40 PM, Natasha F. Noy wrote:

> And as far as loading terminologies from WebProtege to BioPortal, we  
> are working on a feature that would allow you to upload them easily  
> once the ontology authors who are using WebProtege decide that the  
> next version is ready to be published.
>
> Natasha
>
>
> On Aug 11, 2010, at 1:29 PM, Trish Whetzel wrote:
>
>> Thanks, my apologies as I did conflate these items. There is a  
>> feature request to load the version of LOINC from the URL you sent.  
>> I'll also put in another request to automatically load new versions  
>> of LONC as they are posted.
>>
>> Trish
>>
>>
>> On Aug 11, 2010, at 1:08 PM, Wynden, Rob wrote:
>>
>>> Yes that is correct.
>>>
>>> But for the terminologies we are creating we hope to use Web  
>>> Protege for that instead of an external site...
>>>
>>>
>>>
>>>
>>> -----Original Message-----
>>> From: Trish Whetzel [whetzel at stanford.edu]
>>> Received: 8/11/10 12:46 PM
>>> To: Wynden, Rob [Rob.Wynden at ucsf.edu]
>>> CC: support at bioontology.org [support at bioontology.org]
>>> Subject: Re: [bioontology-support] LOINC Update on BioPortal
>>>
>>> Hi Rob,
>>>
>>> I may have mixed tasks here. Is it that you would like to have the
>>> version of LOINC at: http://loinc.org/news/loinc-version-2-32-and-relma-version-4-5-available.html/view
>>> loaded into BioPortal AND have BioPortal monitor this site to
>>> automatically load new versions of LOINC?
>>>
>>> Or are there terminologies that you are developing that you would  
>>> like
>>> included in the automatic loading process?
>>>
>>> Trish
>>>
>>>
>>> On Aug 11, 2010, at 9:11 AM, Trish Whetzel wrote:
>>>
>>>> Thanks Rob. I've added that as a Feature Request.
>>>>
>>>> Trish
>>>>
>>>>
>>>> On Aug 11, 2010, at 8:32 AM, Wynden, Rob wrote:
>>>>
>>>>> Hi Trish,
>>>>>
>>>>> The version that we are thinking of tracking to is posted here: http://loinc.org/news/loinc-version-2-32-and-relma-version-4-5-available.html/view
>>>>>
>>>>> Thanks!
>>>>> Rob
>>>>>
>>>>>
>>>>> On 8/11/10 8:28 AM, "Trish Whetzel" <whetzel at stanford.edu> wrote:
>>>>>
>>>>> Hi Rob,
>>>>>
>>>>> Can you provide more information on which version of LOINC you  
>>>>> would
>>>>> like loaded? For example, is it a version distributed with UMLS or
>>>>> from another source?
>>>>>
>>>>> We do have an automatic import/loading process for terminologies/
>>>>> ontologies. Is the ontology that you would like included in the
>>>>> automatic pull already loaded in BioPortal? Can you send us the  
>>>>> URL
>>>>> to
>>>>> check for new versions of the ontology?
>>>>>
>>>>> Thanks,
>>>>> Trish
>>>>>
>>>>>
>>>>> On Aug 11, 2010, at 7:53 AM, Wynden, Rob wrote:
>>>>>
>>>>>> Hello,
>>>>>>
>>>>>> For the Lab Norm Health Ontology Mapper (HOM) project we need  
>>>>>> to map
>>>>>> into LOINC.  The version of LOINC that you have posted on  
>>>>>> BioPortal
>>>>>> is out of date.  Is it possible to get that updated some time  
>>>>>> over
>>>>>> the next couple of months?
>>>>>>
>>>>>> Also, is it possible to build a web crawler that automatically
>>>>>> alerts the BioPortal staff when new versions of posted ontologies
>>>>>> are ready for download and import into BioPortal?
>>>>>>
>>>>>> Thanks!
>>>>>> Rob Wynden
>>>>>> UCSF
>>>>>> _______________________________________________
>>>>>> bioontology-support mailing list
>>>>>> bioontology-support at lists.stanford.edu
>>>>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>>>>
>>>>>
>>>>
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>>>
>>
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>




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