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[bioontology-support] definition cross-references not shown

Natasha F. Noy noy at stanford.edu
Mon Aug 23 19:56:25 PDT 2010


We pull it from OBO Foundry -- and, from there, we get it from this  
address: http://bgee.unil.ch/download/homology_ontology.obo

If you can suggest a better place for us to look, we'll be happy to do  
that. Not sure where OLS gets it from though.

Natasha


On Aug 23, 2010, at 6:00 PM, Hilmar Lapp wrote:

> I assume so - I don't think the OLS added the xrefs themselves. I am  
> not the maintainer of the ontology, so I can't tell you where that  
> version of the ontology is that the OLS managed to obtain.
>
> 	-hilmar
>
> On Aug 23, 2010, at 4:34 PM, Natasha F. Noy wrote:
>
>> Hi Hilmar,
>>
>> I checked the OBO file for the Homology ontology, and those xrefs  
>> are not in there. Is there a more complete file that we should be  
>> loading instead?
>>
>> Thanks!
>>
>> Natasha
>>
>>
>> On Aug 20, 2010, at 10:03 AM, Hilmar Lapp wrote:
>>
>>> The BioPortal doesn't seem to be showing definitional cross- 
>>> references. For example, check out paralogy (or most any other  
>>> term from the Homology Ontology - namespace HOM) at the OLS:
>>>
>>> http://www.ebi.ac.uk/ontology-lookup/?termId=HOM%3A0000011
>>>
>>> and at the Bioportal:
>>>
>>> http://bioportal.bioontology.org/visualize/42117/?conceptid=HOM%3A0000011
>>>
>>> The xrefs for definitions are extremely useful to check the origin  
>>> for dubious or questionable term labels.
>>>
>>> 	-hilmar
>>> -- 
>>> ===========================================================
>>> : Hilmar Lapp  -:- Durham, NC -:- informatics.nescent.org :
>>> ===========================================================
>>>
>>>
>>>
>>> _______________________________________________
>>> bioontology-support mailing list
>>> bioontology-support at lists.stanford.edu
>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>
>
> -- 
> ===========================================================
> : Hilmar Lapp  -:- Durham, NC -:- informatics.nescent.org :
> ===========================================================
>
>
>




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