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[bioontology-support] definition cross-references not shown

Hilmar Lapp hlapp at nescent.org
Mon Aug 23 20:18:26 PDT 2010


As I said, I'm not the maintainer, and I don't collaborate with them  
either, so I can't suggest a place to look. I would suggest you ask  
the maintainer, if there is one listed.

	-hilmar

On Aug 23, 2010, at 10:56 PM, Natasha F. Noy wrote:

> We pull it from OBO Foundry -- and, from there, we get it from this  
> address: http://bgee.unil.ch/download/homology_ontology.obo
>
> If you can suggest a better place for us to look, we'll be happy to  
> do that. Not sure where OLS gets it from though.
>
> Natasha
>
>
> On Aug 23, 2010, at 6:00 PM, Hilmar Lapp wrote:
>
>> I assume so - I don't think the OLS added the xrefs themselves. I  
>> am not the maintainer of the ontology, so I can't tell you where  
>> that version of the ontology is that the OLS managed to obtain.
>>
>> 	-hilmar
>>
>> On Aug 23, 2010, at 4:34 PM, Natasha F. Noy wrote:
>>
>>> Hi Hilmar,
>>>
>>> I checked the OBO file for the Homology ontology, and those xrefs  
>>> are not in there. Is there a more complete file that we should be  
>>> loading instead?
>>>
>>> Thanks!
>>>
>>> Natasha
>>>
>>>
>>> On Aug 20, 2010, at 10:03 AM, Hilmar Lapp wrote:
>>>
>>>> The BioPortal doesn't seem to be showing definitional cross- 
>>>> references. For example, check out paralogy (or most any other  
>>>> term from the Homology Ontology - namespace HOM) at the OLS:
>>>>
>>>> http://www.ebi.ac.uk/ontology-lookup/?termId=HOM%3A0000011
>>>>
>>>> and at the Bioportal:
>>>>
>>>> http://bioportal.bioontology.org/visualize/42117/?conceptid=HOM%3A0000011
>>>>
>>>> The xrefs for definitions are extremely useful to check the  
>>>> origin for dubious or questionable term labels.
>>>>
>>>> 	-hilmar
>>>> -- 
>>>> ===========================================================
>>>> : Hilmar Lapp  -:- Durham, NC -:- informatics.nescent.org :
>>>> ===========================================================
>>>>
>>>>
>>>>
>>>> _______________________________________________
>>>> bioontology-support mailing list
>>>> bioontology-support at lists.stanford.edu
>>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>>
>>
>> -- 
>> ===========================================================
>> : Hilmar Lapp  -:- Durham, NC -:- informatics.nescent.org :
>> ===========================================================
>>
>>
>>
>

-- 
===========================================================
: Hilmar Lapp  -:- Durham, NC -:- informatics.nescent.org :
===========================================================






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