Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] definition cross-references not shown

Natasha F. Noy noy at stanford.edu
Mon Aug 23 22:40:59 PDT 2010


We'll try to contact them and see if there is a better place for us to  
pull from. Thank you for the suggestion.

Natasha


On Aug 23, 2010, at 8:18 PM, Hilmar Lapp wrote:

> As I said, I'm not the maintainer, and I don't collaborate with them  
> either, so I can't suggest a place to look. I would suggest you ask  
> the maintainer, if there is one listed.
>
> 	-hilmar
>
> On Aug 23, 2010, at 10:56 PM, Natasha F. Noy wrote:
>
>> We pull it from OBO Foundry -- and, from there, we get it from this  
>> address: http://bgee.unil.ch/download/homology_ontology.obo
>>
>> If you can suggest a better place for us to look, we'll be happy to  
>> do that. Not sure where OLS gets it from though.
>>
>> Natasha
>>
>>
>> On Aug 23, 2010, at 6:00 PM, Hilmar Lapp wrote:
>>
>>> I assume so - I don't think the OLS added the xrefs themselves. I  
>>> am not the maintainer of the ontology, so I can't tell you where  
>>> that version of the ontology is that the OLS managed to obtain.
>>>
>>> 	-hilmar
>>>
>>> On Aug 23, 2010, at 4:34 PM, Natasha F. Noy wrote:
>>>
>>>> Hi Hilmar,
>>>>
>>>> I checked the OBO file for the Homology ontology, and those xrefs  
>>>> are not in there. Is there a more complete file that we should be  
>>>> loading instead?
>>>>
>>>> Thanks!
>>>>
>>>> Natasha
>>>>
>>>>
>>>> On Aug 20, 2010, at 10:03 AM, Hilmar Lapp wrote:
>>>>
>>>>> The BioPortal doesn't seem to be showing definitional cross- 
>>>>> references. For example, check out paralogy (or most any other  
>>>>> term from the Homology Ontology - namespace HOM) at the OLS:
>>>>>
>>>>> http://www.ebi.ac.uk/ontology-lookup/?termId=HOM%3A0000011
>>>>>
>>>>> and at the Bioportal:
>>>>>
>>>>> http://bioportal.bioontology.org/visualize/42117/?conceptid=HOM%3A0000011
>>>>>
>>>>> The xrefs for definitions are extremely useful to check the  
>>>>> origin for dubious or questionable term labels.
>>>>>
>>>>> 	-hilmar
>>>>> -- 
>>>>> ===========================================================
>>>>> : Hilmar Lapp  -:- Durham, NC -:- informatics.nescent.org :
>>>>> ===========================================================
>>>>>
>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> bioontology-support mailing list
>>>>> bioontology-support at lists.stanford.edu
>>>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>>>
>>>
>>> -- 
>>> ===========================================================
>>> : Hilmar Lapp  -:- Durham, NC -:- informatics.nescent.org :
>>> ===========================================================
>>>
>>>
>>>
>>
>
> -- 
> ===========================================================
> : Hilmar Lapp  -:- Durham, NC -:- informatics.nescent.org :
> ===========================================================
>
>
>




More information about the bioontology-support mailing list