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[bioontology-support] Addition of SNOMED and MEDDRA to hierarchy services

Eamonn Maguire eamonnmag at gmail.com
Wed Dec 1 06:30:20 PST 2010


Ok, I was partially right after all. The latest version of SNOMED (44777) Is
not displaying anything for ontology roots.

Can this be indexed?

Many thanks,

Eamonn

On 26 November 2010 16:02, Eamonn Maguire <eamonnmag at gmail.com> wrote:

> Damn,
>
> ok, I will check again :D
>
> thanks Trish! See you next week right?
>
> eamonn
>
>
> On 26 November 2010 15:55, Trish Whetzel <whetzel at stanford.edu> wrote:
>
>> These calls to get the roots for SNOMEDCT and MedDRA are working:
>>
>> http://rest.bioontology.org/bioportal/concepts/42789/root?email=example@example.org
>>
>> http://rest.bioontology.org/bioportal/concepts/42280/root?email=example@example.org
>>
>> Trish
>>
>>
>> On Nov 26, 2010, at 7:27 AM, Eamonn Maguire wrote:
>>
>> ah, ok. Maybe that'll work. You see, the code works by getting the
>> ontology id, then getting the latest version of that ontology. I'd need to
>> change the code to allow selection of specification of the ontology, but
>> this isn't a big deal.
>>
>> Although, when I did a query on bioportal yesterday, it didn't pick up
>> anything when i tried to retrieve the ontology roots.
>>
>> thanks,
>>
>> eamonn
>>
>> On 26 November 2010 15:25, Trish Whetzel <whetzel at stanford.edu> wrote:
>>
>>> Hi Eamonn,
>>>
>>> By latest version, do you mean the latest version of SNOMEDCT and MedDRA
>>> available from the 2010AB UMLS Metathesaurus?  There are older versions of
>>> these terminologies available for use with the Hierarchy web services.
>>>
>>> Trish
>>>
>>>
>>> On Nov 25, 2010, at 7:38 AM, Eamonn Maguire wrote:
>>>
>>> Hi Trish et al,
>>>
>>> Would it be possible to load the latest versions of these ontologies of
>>> Bioportal so that I can serve them out from our tools following some user
>>> requests?
>>>
>>> Many thanks,
>>>
>>> Eamonn
>>>
>>> --
>>>
>>> -------------------------------------------------------------
>>> Eamonn Maguire				
>>> Lead Engineer - ISA tools <http://www.isa-tools.org/>													
>>>
>>> University of Oxford		Tel: +44(0)1865 610788
>>> Oxford e-Research Center	
>>> 7 Keble Road, Oxford		skype: maguire1986
>>> OX1 3QG, UK			
>>> -------------------------------------------------------------
>>>
>>>
>>> _______________________________________________
>>> bioontology-support mailing list
>>> bioontology-support at lists.stanford.edu
>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>>
>>>
>>>
>>
>>
>> --
>>
>> -------------------------------------------------------------
>> Eamonn Maguire				
>> Lead Engineer - ISA tools <http://www.isa-tools.org/>													
>>
>> University of Oxford		Tel: +44(0)1865 610788
>> Oxford e-Research Center	
>> 7 Keble Road, Oxford		skype: maguire1986
>> OX1 3QG, UK			
>> -------------------------------------------------------------
>>
>>
>>
>>
>
>
> --
>
> -------------------------------------------------------------
> Eamonn Maguire				
> Lead Engineer - ISA tools <http://www.isa-tools.org>													
>
> University of Oxford		Tel: +44(0)1865 610788
> Oxford e-Research Center	
> 7 Keble Road, Oxford		skype: maguire1986
> OX1 3QG, UK			
> -------------------------------------------------------------
>
>
>


-- 

-------------------------------------------------------------
Eamonn Maguire				
Lead Engineer - ISA tools <http://www.isa-tools.org>													

University of Oxford		Tel: +44(0)1865 610788
Oxford e-Research Center	
7 Keble Road, Oxford		skype: maguire1986
OX1 3QG, UK			
-------------------------------------------------------------
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