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[bioontology-support] FW: BioPortal VM Image - access information

Trish Whetzel whetzel at stanford.edu
Wed Dec 1 14:16:38 PST 2010


Hi Paul, 

Can you help Sina with installing the VM image?

Thanks,
Trish


On Dec 1, 2010, at 10:08 PM, Madani,Sina wrote:

> Hi Trish,
> I downloaded and unzipped the appliance file. I tried to open the ncbo-appliance ovf file using vmware player but got the error shown below. Then I tried converting it into a vmx file using ovf tool but got error again (last screenshot). Any hint?
>  
> Thanks
> Sina
>  
>  
> <image002.jpg>
>  
>  
> <image003.png>
>  
>  
>  
> <image004.png>
>  
>  
>  
> From: Trish Whetzel [mailto:whetzel at stanford.edu] 
> Sent: Tuesday, November 23, 2010 4:00 PM
> To: Madani,Sina
> Subject: BioPortal VM Image - access information
>  
> Thank you for providing the user metrics information. The VM image can be downloaded from:  
> http://www.bioontology.org/ncbo-appliance/ncbo-appliance-v0.1.tar  
> and the documentation is at:
> http://www.bioontology.org/wiki/index.php/Category:NCBO_Virtual_Appliance
> If you have any questions with the installation, please email support at bioontology.org. 
>  
> Trish  
>  
>  
> On Nov 22, 2010, at 12:22 PM, Madani,Sina wrote:
> 
> 
> Hi Trish,
> We previously tested MetaMap for analyzing our dictated notes but when Nigam presented his talk about Mgrep and the fact that it can process text files more accurately we decided to launch a local version of it because we didn't want to send our patient dictation files over the net to Bioportal text analysis services.
> The intended user at this moment is only I &  possibly Mike Riben. I anticipate to run the instance for text processing of at least 5 million clinical dictated notes.
>  
> Sina
>  
> From: Trish Whetzel [mailto:whetzel at stanford.edu] 
> Sent: Monday, November 22, 2010 1:59 PM
> To: Madani,Sina
> Cc: Ray Fergerson
> Subject: Re: AMIA workshop
>  
> Hi Sina, 
>  
> The support forum that Ray mentioned is our mailing list: support at bioontology.org.  Can you provide a short description on how you plan to use the VM image and the expected number of users? We are collecting additional user metrics in response to queries from our Advisory Board.
>  
> Thanks!
> Trish 
>  
>  
> On Nov 22, 2010, at 6:25 AM, Madani,Sina wrote:
> 
> 
> 
> Thank you Ray.
> What is the url for support forum?
>  
> Sina
>  
>  
> From: Ray Fergerson [mailto:ray.fergerson at stanford.edu] 
> Sent: Friday, November 19, 2010 4:16 PM
> To: 'Nigam Shah'; Madani,Sina
> Cc: 'Trish Whetzel'
> Subject: RE: AMIA workshop
>  
> Sina,
>  
> Happy to hear you are interested in the VM instance. Trish (copied) is responsible for collecting the necessary information and providing you with the link. She also monitors the support mailing list where you should send any help requests.
>  
> Ray
>  
>  
> From: Nigam Shah [mailto:nigam at stanford.edu] 
> Sent: Friday, November 19, 2010 10:15 AM
> To: Madani,Sina
> Cc: Ray Fergerson; support at bioontology.org
> Subject: Re: AMIA workshop
>  
> Hi Sina,
>  
> It was good to meet you as well. I am copying Ray Fergerson, our project manager, who can direct you to getting a VM instance. 
>  
> Regards,
> Nigam.
> ps: I will be leaving for a month long trip to my home country, from Nov 26 - Dec 29 so might be unresponsive on email.
>  
> On Fri, Nov 19, 2010 at 6:48 AM, Madani,Sina <AHMadani at mdanderson.org> wrote:
> Hi Nigam,
>  
> It was very nice meeting you at AMIA. I really enjoyed your workshop presentation. We talked briefly about the possibility of a VM instance that Bioportal can provide for our institution note analysis purposes. I appreciate your help on this.
>  
> Thanks
> Sina
>  
>  
>  
>  
>  
> Sina Madani, MD MS
> Data Integration & Modeling
> MD Anderson Cancer Center
> Phone : 713-563-1803
>  
>  
>  
>  
>  
> Trish Whetzel, PhD
> Outreach Coordinator
> The National Center for Biomedical Ontology
> Ph: 650-721-2378
> whetzel at stanford.edu
> http://www.bioontology.org
>  
>  
>  
>  
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support

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