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[bioontology-support] FW: BioPortal VM Image - access information

Madani,Sina AHMadani at
Fri Dec 3 12:22:14 PST 2010

yes I am sub setting it from UMLS but I am running a local instance of Bioportal on my machine.
How about the index folder? Within my subsets, like ICD-9,  under Meta folder I occasionally see Index folder next to Changes folder. Should I exclude that one as well?

Thanks for the help

From: Kanjamala, Pradip P. [mailto:Kanjamala.Pradip at]
Sent: Friday, December 03, 2010 2:19 PM
To: Paul R Alexander; Madani,Sina
Cc: support at
Subject: RE: [bioontology-support] FW: BioPortal VM Image - access information

You would need to zip up all the RRF files excluding the CHANGES folder and submit it via the BioPortal UI. Often times the size gets to be too big for the upload and so I manually ftp the file over to the right location.
If you run into difficulties getting the load to work, please let me know the SAB you are interested in loading and I would help you get it into BioPortal. I assume you are subsetting the ontologies from the 2010AB version of the UMLS?


From: Paul R Alexander [mailto:palexander at]
Sent: Friday, December 03, 2010 2:13 PM
To: Madani,Sina
Cc: support at; Kanjamala, Pradip P.
Subject: Re: [bioontology-support] FW: BioPortal VM Image - access information
On 12/2/10 7:11 AM, Madani,Sina wrote:
For RRF format terminologies, which RRF file I should use for upload (MRSAB, MRCONSO, or all of them)? For ICD9 below I just chose one and waiting for an error to happen.

Sina: My guess is that you would need to upload a zip archive containing all of the files, but I've CCed Pradip, our RRF expert, to see if he can shed some light for us.

Pradip, can you clarify this for Sina please?

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