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[bioontology-support] Question about the REST service for Mesh Extraction
whetzel at stanford.edu
Sun Dec 5 16:46:44 PST 2010
Thanks Carlo. To build-up the proper URL, here are the pieces to use with the View Extraction web service:
http://rest.bioontology.org/bioportal/viewextractor/ --> web service signature
44776/ --> ontology version identifier
?conceptid=U000006 --> concept identifier for parent term
&ontologyname=http://example.org/testing.owl&delay=10 --> name of resulting ontology and timing parameter.
Therefore, the full URL is:
On Dec 2, 2010, at 9:40 AM, Carlo Torniai wrote:
> Hi Trish,
> please let me know if this helped or if you need more info.
> On Dec 1, 2010, at 5:28 PM, torniai at ohsu.edu wrote:
>> I don't think so. It's the one with all disease subcategories. If you look for disease in the extractor is this one
>> On Dec 1, 2010, at 5:08 PM, "Trish Whetzel" <whetzel at stanford.edu> wrote:
>>> Hi Carlo,
>>> Is this the 'Disease' term you refer to in MeSH:
>>> On Dec 2, 2010, at 1:49 AM, Carlo Torniai wrote:
>>>> Hi Trish,
>>>> yesterday I've played around a bit with the Extraction tool (very nice).
>>>> As you know we are trying to extract all the mesh disease branch.
>>>> You've pointed us to the documentation to use a rest service to have a whole branch extracted (http://www.bioontology.org/wiki/index.php/View_Extraction).
>>>> I am trying to figure out what parameters to use (i.e. what the URL of the rest service would look like) in order to get all the subclasses of Disease (Mesh category) [see the superclass information here http://rest.bioontology.org/bioportal/rdf/44776/U000006]
>>>> It would be probably easier for you to send us the correct URL than me to figure out the correct values of the parameters :-)
>>>> We can get in touch anytime if you need more info.
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