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[bioontology-support] Fwd: How do I get the child nodes for the Meddra ontology

Eamonn Maguire eamonnmag at gmail.com
Thu Dec 9 00:33:39 PST 2010


Ok, I will try this and let you know how it does! :)

Thanks,

Eamonn

--
Eamonn Maguire

On 9 Dec 2010, at 00:54, "Ray Fergerson" <ray.fergerson at stanford.edu> wrote:

> Eamonn,
> 
>  
> 
> We suggest that you use the “get term” rest API call rather than the get-children or get-parents call. The get-term call also returns the parents and children of a term.  This call should always work.
> 
>  
> 
> Ray
> 
>  
> 
>  
> 
> From: bioontology-support-bounces at lists.stanford.edu [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of Eamonn Maguire
> Sent: Wednesday, December 08, 2010 6:09 AM
> To: Michael Dorf; Trish Whetzel; support at bioontology.org
> Subject: [bioontology-support] Fwd: How do I get the child nodes for the Meddra ontology
> 
>  
> 
> Hi Guys,
> 
>  
> 
> This is quite urgent, is there any way you can tell me how to get the children properly for Meddra and SNOMED?
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> 
> many thanks as always!
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>  
> 
> Eamonn
> 
> ---------- Forwarded message ----------
> From: Eamonn Maguire <eamonnmag at gmail.com>
> Date: 3 December 2010 16:01
> Subject: How do I get the child nodes for the Meddra ontology
> To: support at bioontology.org
> 
> 
> Hello,
> 
>  
> 
> First of all, thanks for indexing the latest version of SnoMed!
> 
>  
> 
> So now I am able to get the hieracrchy services working for pretty much every ontology apart from Meddra & SnoMed. Although, I'm noticing that these are in a format called RRF, so perhaps this is where the problem is coming from. I can get the root terms in the ontology ok, but when I attempt to get the children for a node, I get nothing back, e.g.
> 
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> http://rest.bioontology.org/bioportal/concepts/children/42280/10005329?level=1
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> I've attached screenshots showing how Every root node of the ontology is depicted as a leaf node (since it can't find any children under them).
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>  
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> If one of you could tell me how to properly query these ontologies using the hierarchy services, I'd be really grateful!
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> Thanks,
> 
>  
> 
> Eamonn
> 
> --
> 
> -------------------------------------------------------------
> Eamonn Maguire                                             
> Lead Engineer - ISA tools                                                                                                                                                  
> University of Oxford                      Tel: +44(0)1865 610788
> Oxford e-Research Center  
> 7 Keble Road, Oxford                    skype: maguire1986
> OX1 3QG, UK                               
> -------------------------------------------------------------
>  
> 
> 
> 
> 
> --
> 
> -------------------------------------------------------------
> Eamonn Maguire                                             
> Lead Engineer - ISA tools                                                                                                                                                  
> University of Oxford                      Tel: +44(0)1865 610788
> Oxford e-Research Center  
> 7 Keble Road, Oxford                    skype: maguire1986
> OX1 3QG, UK                               
> -------------------------------------------------------------
>  
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