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[bioontology-support] AMIA workshop

Madani,Sina AHMadani at
Mon Dec 13 07:43:07 PST 2010

Hi Nigam,
Thanks to Trish & Paul with their great help on setting up an instance of ncbo-appliance, I am closer to the point for using annotation service.
Looking at your slides, I see an "OWL" icon as one of the output formats for annotation results. When I did my quick sample test on few lines of text I saw only the first three formats: txt, csv, and xml formats. Is there a way to activate OWL output as well or is this an enhancement for future?

My plan is to run the annotation services on a corpus of millions of notes (perhaps only specific sections first) for local "Quality" ontology building purposes.


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From: Nigam Shah [mailto:nigam at]
Sent: Friday, November 19, 2010 12:15 PM
To: Madani,Sina
Cc: Ray Fergerson; support at
Subject: Re: AMIA workshop

Hi Sina,

It was good to meet you as well. I am copying Ray Fergerson, our project manager, who can direct you to getting a VM instance.

ps: I will be leaving for a month long trip to my home country, from Nov 26 - Dec 29 so might be unresponsive on email.

On Fri, Nov 19, 2010 at 6:48 AM, Madani,Sina <AHMadani at<mailto:AHMadani at>> wrote:
Hi Nigam,

It was very nice meeting you at AMIA. I really enjoyed your workshop presentation. We talked briefly about the possibility of a VM instance that Bioportal can provide for our institution note analysis purposes. I appreciate your help on this.


Sina Madani, MD MS
Data Integration & Modeling
MD Anderson Cancer Center
Phone : 713-563-1803

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