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[bioontology-support] noticing some slow response times from the resource index

Ray Fergerson ray.fergerson at stanford.edu
Fri Dec 17 13:41:58 PST 2010


That is great news! We spent a long time working on the performance of the
resource index. It is good to see that this work paid off.

 

Ray

 

From: Brelsford, Jeffrey S. (LNG-DAY)
[mailto:Jeffrey.Brelsford at elsevier.com] 
Sent: Friday, December 17, 2010 1:37 PM
To: 'Ray Fergerson'; 'Trish Whetzel'
Cc: Dale, David (LNG-CON); Berenstein, Max (ELS-NYC);
'support at bioontology.org'
Subject: RE: [bioontology-support] noticing some slow response times from
the resource index

 

Thanks Ray. As of this afternoon, the "400 Bad Response" errors are gone
and we're getting results back more quickly that I've ever seen before in
production. It is working really REALLY well.

 

Thanks so much for your help on this.

 

Jeff 

 

  _____  

From: Ray Fergerson [mailto:ray.fergerson at stanford.edu] 
Sent: Friday, December 17, 2010 3:12 PM
To: 'Trish Whetzel'; Brelsford, Jeffrey S. (LNG-DAY)
Cc: Dale, David (LNG-CON); Berenstein, Max (ELS-NYC);
support at bioontology.org
Subject: RE: [bioontology-support] noticing some slow response times from
the resource index

 

Signature should not have changed. The slow performance of resource index
should be fixed now.

 

Ray

 

From: bioontology-support-bounces at lists.stanford.edu
[mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of Trish
Whetzel
Sent: Friday, December 17, 2010 8:20 AM
To: Jeffrey S. (LNG-DAY) Brelsford; Ray Fergerson
Cc: David (LNG-CON) Dale; Berenstein, Max (ELS-NYC);
support at bioontology.org
Subject: Re: [bioontology-support] noticing some slow response times from
the resource index

 

Hi Jeff, 

 

I am not aware of any changes to the signature. Ray, do you know of any
changes?

 

Trish 

 

 

On Dec 17, 2010, at 6:45 AM, Brelsford, Jeffrey S. (LNG-DAY) wrote:

 

Hi Trish,

 

Our calls to the resource index do not appear to be working now at all. If
I perform the following call to the resource index:

 

http://rest.bioontology.org/resource_index/email=
<http://rest.bioontology.org/resource_index/email=&applicationid=8o654o34-
1146-9233-944l-we5gkop342uk&filterNumber=true&minTermSize=0&withSynonyms=t
rue&ontologiesToKeepInResult=&semanticTypes=&levelMax=0&mappingTypes=&addi
tionalStopWords=&isStopWordsCaseSenstive=false&conceptids=1032%2FLung&isVi
rtualOntologyId=true&mode=INTERSECTION&elementid=&resourceids=CT%2CDBK%2CO
MIM%2CRXRD&elementDetails=true&withContext=false&counts=true&offset=0&limi
t=10&format=xml&submit=Get+annotations>
&applicationid=8o654o34-1146-9233-944l-we5gkop342uk&filterNumber=true&minT
ermSize=0&withSynonyms=true&ontologiesToKeepInResult=&semanticTypes=&level
Max=0&mappingTypes=&additionalStopWords=&isStopWordsCaseSenstive=false&con
ceptids=1032%2FLung&isVirtualOntologyId=true&mode=INTERSECTION&elementid=&
resourceids=CT%2CDBK%2COMIM%2CRXRD&elementDetails=true&withContext=false&c
ounts=true&offset=0&limit=10&format=xml&submit=Get+annotations

 

 

I get back an HTTP error 400 Bad Request.

 

Is there something that changed in the request parameters?

 

Thanks,

 

Jeff

 

 

  _____  

From: Trish Whetzel [mailto:whetzel at stanford.edu] 
Sent: Friday, December 17, 2010 1:31 AM
To: Brelsford, Jeffrey S. (LNG-DAY)
Cc: Berenstein, Max (ELS-NYC); Dale, David (LNG-CON)
Subject: Re: noticing some slow response times from the resource index

 

Hi Jeff, 

 

The revision to the Resource Index has been released. If you notice any
continued problems, please send an email to support at bioontology.org.

 

Thanks,

Trish

 

Trish Whetzel, PhD

Outreach Coordinator

The National Center for Biomedical Ontology

Ph: 650-721-2378

whetzel at stanford.edu

http://www.bioontology.org <http://www.bioontology.org/> 

 

 

 

 

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