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[bioontology-support] Back to Ontologies

Michael Dorf mdorf at
Tue Feb 2 16:33:06 PST 2010

Hi Eamonn,


Sorry, but I'm not entirely clear on what code you are looking for.  Is it
the back-end abstraction layer that deals with both formats uniformly
(that is already a Java code available via our source repository)? Is it
the UI code that processes the returned XML response (that is written
using the Ruby on Rails framework)?






From: Eamonn Maguire [mailto:maguire at] 
Sent: Tuesday, February 02, 2010 8:56 AM
To: Trish Whetzel; Michael Dorf
Subject: Back to Ontologies


Hi trish and misha!


I hope you are both well! I am now back to working on this ontology stuff
and I'm hitting a brick wall with rendering ontologies. Do you happen to
have the code at hand which you use to render the OWL and OBO files on the
web app? I can then use this to make the Java version for the
configuration tool. At the minute I am trying to convert from OBO to OWL
and then deal with all files the same way (by reasoning over all OWL
files) but there are problems when converting OBO to OWL and the
representation of the ontology in my tool looks different to that rendered
in bioportal! 


many thanks in advance,



Eamonn Maguire

Software Engineer - NET Project












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