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[bioontology-support] hierarchy services not working?

Michael Dorf mdorf at
Thu Feb 4 17:17:31 PST 2010

Hi Tomasz,

Sorry about your trouble.  We've just released a new version of BioPortal
and the issue you reported revealed a bug in our new hierarchy services
code. It has been fixed, and the links below should now work correctly.

Please let us know if you run into any other issues with BioPortal

Thanks again!


-----Original Message-----
From: bioontology-support-bounces at
[mailto:bioontology-support-bounces at] On Behalf Of
Tomasz Adamusiak
Sent: Thursday, February 04, 2010 8:34 AM
To: support at
Subject: [bioontology-support] hierarchy services not working?


Just running the example URLs from the REST wiki:
=example at
l=example at

gives me the following error:
/bioportal/virtual/parents/1009/DOID:1909 2010-02-04 08:28:11.352 PST 
Internal Server Error id : id : id : id ---- Debugging information ---- 
message : id : id cause-exception : 
cause-message : id : id class : org.ncbo.stanford.bean.obs.OntologyBean 
required-type : org.ncbo.stanford.bean.obs.OntologyBean line number : 2 
------------------------------- 500


Tomasz Adamusiak, MD, PhD
European Bioinformatics Institute
+44 (0) 1223 492 562
tomasz.adamusiak at
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