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[bioontology-support] Bioportal problem with step 3?

Trish Whetzel whetzel at stanford.edu
Tue Jan 5 16:06:25 PST 2010


Hi Kranthi, 

 

Thanks for your email about the NCBO Resource Index error.  Yes, this
appears to be an error with the Cell Line ontology. I have reported this as
a bug. 

 

Trish  

 

 

From: Kranthi Kode [mailto:kranthi at stanford.edu] 
Sent: Tuesday, January 05, 2010 9:10 AM
To: Trish Whetzel
Subject: Bioportal problem with step 3?

 

Hi Trish,

 

When searching using few ontologies like 'Cell line ontology' I am getting
the message 'An error occured. null' instead of any results. 

 

If I research for the term 'cancer' and add cancer from BIRNLex ontology to
step 2 and search in ArrayExpress, I am getting few results. If I choose
both BIRNLex and Cell line ontology, and choose 'OR' I dont get any results.
I am wondering if this is normal. 

 

There must be some problem with 'Cell line ontology'. But, when I select all
ontologies from step 1, and search using 'OR', I should be able to get
results right.. Even if one of those ontologies has any problem, I am  not
getting any results. I am wondering if this can be changed.

 

Thanks,

Kranthi

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