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[bioontology-support] HPO loading

Trish Whetzel whetzel at stanford.edu
Wed Jun 9 19:00:01 PDT 2010


Attached is the metadata file. Please review for accuracy of data for  
HPO and then commit to SVN and let us know the full path to the file.

Thanks,
Trish


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On Jun 8, 2010, at 8:20 AM, Trish Whetzel wrote:

> Hi Sebastian,
>
> Versions of HPO listed as "Archived, not available to explore" were  
> loaded fine. To manage space on the database, we periodically run a  
> script to archive versions.
>
> I see that HPO is now in a SVN repository (http://compbio.charite.de/svn/hpo/trunk/human-phenotype-ontology.obo 
> ). We can set-up the automatic pull to point to that location in the  
> future. I'll send a metadata file that you can commit to your SVN  
> repository and then just let us know the URL where the file is  
> located and we can test out the pull process.
>
> Thanks,
> Trish
>
>
>
> On Jun 8, 2010, at 6:10 AM, Sebastian K?hler wrote:
>
>> Hi Trish,
>>
>> just wanted to check some issues. Some versions of the HPO are  
>> listed as "Archived, not available to explore". Is that ok or does  
>> that mean anything went wrong with importing the HPO?
>> Secondly, the last version from 06/07/2010 is listed as "See Remote  
>> Site". There seems to be some kind of error...  !?
>>
>> Thanks in advance,
>> Sebastian
>>
>>> Just wanted to check back to see that the loading of HPO is going  
>>> smoothly. Based on the view of BioPortal it seems to be ok, have  
>>> you noticed any issues?
>>
>> --
>> Sebastian K?hler, M.Sc. bioinformatics
>> Institut f?r Medizinische Genetik
>> Universit?tsklinikum Charit?
>> Augustenburger Platz 1
>> 13353 Berlin
>> Germany
>> voice: 49-30-450569135
>> email: sebastian.koehler at charite.de
>> web:
>> http://compbio.charite.de
>> http://human-phenotype-ontology.org
>>
>
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> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support



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