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whetzel at stanford.edu
Fri Jun 18 16:36:24 PDT 2010
Apologies for the delay. You have been added as the owner of the
Pathway Ontology and should see a link for 'Submit New Version' on the
page: http://bioportal.bioontology.org/ontologies/42912 when logged
in. If not, please let us know.
On Jun 9, 2010, at 10:41 PM, Trish Whetzel wrote:
> I'll check tomorrow to make sure that you have privileges to upload
> new versions of the Pathway Ontology. After logging in, you should
> see a link on the Metadata page: http://bioportal.bioontology.org/ontologies/42457
> for 'Submit New Version' in the upper left-hand. In the meantime, I
> uploaded the latest version.
> If you would like to have the Pathway Ontology automatically loaded
> from your CVS repository, please review the attached ontology
> metadata file for accuracy and then commit to your repository and
> send us back the full path where the file is located. After that we
> can test out the process.
> On Jun 9, 2010, at 1:49 PM, Petri, Victoria wrote:
>> Hi Trish,
>> I do have an account on BioPortal – I just did not see any option
>> for updating.
>> PW is also at SourceForge with a CVS repository and I can make sure
>> that every new version is promptly updated there as well. I usually
>> don’t update the CVS once a new obo file is placed in the
>> data_release because we only do updates in our database once a
>> week. I just have to keep track.
>> Victoria Petri, Ph.D.
>> Research Scientist
>> Rat Genome Database
>> Human and Molecular Genetics Center
>> Medical College of Wisconsin
>> 8701 Watertown Plank Road
>> Milwaukee, WI, 53226
>> (414) 456-8875
>> FAX: 414 456 6595
>> vpetri at mcw.edu
>> From: Trish Whetzel [mailto:whetzel at stanford.edu]
>> Sent: Wednesday, June 09, 2010 3:44 PM
>> To: Petri, Victoria
>> Cc: support
>> Subject: Re: [bioontology-support] Feedback
>> Hi Victoria,
>> Do you have an account on BioPortal? If so, I'll double-check to
>> make sure that you have permission to upload new versions of the
>> Pathway Ontology. Alternatively, if the Pathway Ontology also
>> exists in a SVN or CVS repository we can set-up an automatic
>> loading process that will load new versions to BioPortal once they
>> are submitted to the SVN or CVS repository.
>> On Jun 9, 2010, at 1:11 PM, admin at bioontology.org wrote:
>> Name : Victoria Petri
>> Email : vpetri at mcw.edu
>> I logged on and looked for a way to update an existing ontology, in
>> my case the Pathway Ontology, but I couldn't find anything (the
>> current version lists March 2010 and there have been many changes
>> Is there a way to update an ontology at your site or should I sent
>> the updated obo file to an email address?
>> The most recent file can be found at RGD's ftp site under FTP
>> Download/data_release - pathway.obo
>> RGD - http://rgd.mcw.edu - Rat Genome Database
>> Thank you,
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
>> Trish Whetzel, PhD
>> Outreach Coordinator
>> The National Center for Biomedical Ontology
>> Ph: 650-721-2378
>> whetzel at stanford.edu
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
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