Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] Feedback

Trish Whetzel whetzel at stanford.edu
Fri Jun 18 16:36:24 PDT 2010


Hi Victoria,

Apologies for the delay. You have been added as the owner of the  
Pathway Ontology and should see a link for 'Submit New Version' on the  
page: http://bioportal.bioontology.org/ontologies/42912 when logged  
in.  If not, please let us know.

Trish


On Jun 9, 2010, at 10:41 PM, Trish Whetzel wrote:

> I'll check tomorrow to make sure that you have privileges to upload  
> new versions of the Pathway Ontology. After logging in, you should  
> see a link on the Metadata page: http://bioportal.bioontology.org/ontologies/42457 
>  for 'Submit New Version' in the upper left-hand. In the meantime, I  
> uploaded the latest version.
>
> If you would like to have the Pathway Ontology automatically loaded  
> from your CVS repository, please review the attached ontology  
> metadata file for accuracy and then commit to your repository and  
> send us back the full path where the file is located. After that we  
> can test out the process.
>
> Trish
>
> <ontologies_PW.txt>
>
>
>
> On Jun 9, 2010, at 1:49 PM, Petri, Victoria wrote:
>
>> Hi Trish,
>>
>> I do have an account on BioPortal – I just did not see any option  
>> for updating.
>>
>> PW is also at SourceForge with a CVS repository and I can make sure  
>> that every new version is promptly updated there as well. I usually  
>> don’t update the CVS once a new obo file is placed in the  
>> data_release because we only do updates in our database once a  
>> week. I just have to keep track.
>>
>> Thanks,
>>
>> Victoria
>>
>> Victoria Petri, Ph.D.
>> Research Scientist
>> Rat Genome Database
>> http://rgd.mcw.edu
>> Human and Molecular Genetics Center
>> Medical College of Wisconsin
>> 8701 Watertown Plank Road
>> Milwaukee, WI, 53226
>> (414) 456-8875
>> FAX: 414 456 6595
>> vpetri at mcw.edu
>>
>> From: Trish Whetzel [mailto:whetzel at stanford.edu]
>> Sent: Wednesday, June 09, 2010 3:44 PM
>> To: Petri, Victoria
>> Cc: support
>> Subject: Re: [bioontology-support] Feedback
>>
>> Hi Victoria,
>>
>> Do you have an account on BioPortal? If so, I'll double-check to  
>> make sure that you have permission to upload new versions of the  
>> Pathway Ontology. Alternatively, if the Pathway Ontology also  
>> exists in a SVN or CVS repository we can set-up an automatic  
>> loading process that will load new versions to BioPortal once they  
>> are submitted to the SVN or CVS repository.
>>
>> Trish
>>
>>
>> On Jun 9, 2010, at 1:11 PM, admin at bioontology.org wrote:
>>
>>
>> Name : Victoria Petri
>>
>> Email : vpetri at mcw.edu
>>
>> Comment:
>> I logged on and looked for a way to update an existing ontology, in  
>> my case the Pathway Ontology, but I couldn't find anything (the  
>> current version lists March 2010 and there have been many changes  
>> since).
>> Is there a way to update an ontology at your site or should I sent  
>> the updated obo file to an email address?
>> The most recent file can be found at RGD's ftp site under FTP  
>> Download/data_release - pathway.obo
>> RGD - http://rgd.mcw.edu - Rat Genome Database
>>
>> Thank you,
>>
>> Victoria
>> _______________________________________________
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>
>> Trish Whetzel, PhD
>> Outreach Coordinator
>> The National Center for Biomedical Ontology
>> Ph: 650-721-2378
>> whetzel at stanford.edu
>> http://www.bioontology.org
>>
>>
>>
>
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.stanford.edu/pipermail/bioontology-support/attachments/20100618/6b36ac36/attachment.html>


More information about the bioontology-support mailing list