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whetzel at stanford.edu
Mon Mar 8 08:47:11 PST 2010
Since the mappings have not been loaded into BioPortal we do not have
a file to provide. Other options would be to parse out this
information from the OBO format file, they are stored in the xref
field or to check with the Disease Ontology web site to see if they
provide the mappings in this form.
On Mar 8, 2010, at 8:32 AM, Ming Guo wrote:
> Hi Trish,
> Thanks for the prompt reply.
> I was wondering if there's a downloadable database (or just a text
> file) that lists the DOID and matching MeSH terms side by side -
> understanding it's not a one-to-one relationship, so that I can do
> mass data query on it all at once. The data field I'm looking for
> are DOID, DO disease name, MeSH disease term. It's for a class
> project at Stanford.
> If this is possible at all, please let me know.
> >>> Trish Whetzel <whetzel at stanford.edu> 3/7/2010 12:12 PM >>>
> Hi Ming,
> Yes, the disease ontology contains mappings to MeSH. For example,
> for the term disease (http://bioportal.bioontology.org/visualize/42463/DOID%253A4
> ) the mappings included in the ontology file are displayed in the
> Xref field. However, for these to be accessible via other components
> of BioPortal additional processing is needed. Once this is complete,
> the mappings will be accessible via the Mappings Web service: http://www.bioontology.org/wiki/index.php/NCBO_REST_services#Mapping_Service
> and can be seen in BioPortal at: http://bioportal.bioontology.org/mappings
> I'll check on the status of processing these, however the person in
> charge is out until Tuesday.
> On Mar 7, 2010, at 8:07 AM, admin at bioontology.org wrote:
>> Name : Ming Guo
>> Email : ming.guo at stanford.edu
>> I'm trying to find out whether there is a mapping between Disease
>> Ontology term (DOID) and MeSH disease terms. If you could point me
>> to right direction as to where to get this information, that'll be
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
> Trish Whetzel, PhD
> Outreach Coordinator
> The National Center for Biomedical Ontology
> Ph: 650-721-2378
> whetzel at stanford.edu
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