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[bioontology-support] Mesh Ontology Annotation Produces no results

Marin, Marina Marina.Marin at nyumc.org
Fri Mar 26 10:37:08 PDT 2010


Thank you for the update.
Marina


On 3/26/10 1:09 PM, "Trish Whetzel" <whetzel at stanford.edu> wrote:

> Dear Marina,
> 
> We encountered a data quality issue with MeSH and are currently re-
> populating this information in order to have it accessible by the
> Annotator early next week. Apologies for the inconvenience.
> 
> Trish
> 
> 
> On Mar 26, 2010, at 8:21 AM, Marin, Marina wrote:
> 
>> Hi Trish,
>> 
>> I was wondering if there is any update on the question below.
>> 
>> Thanks.
>> 
>> Marina Marin
>> Senior Applications Programmer
>> Division of Educational Informatics
>> New York University School of Medicine
>> 550 First Avenue, Coles 202
>> New York, NY 10016
>> Tel: (212) 263-2058
>> 
>> 
>> On 3/19/10 11:26 AM, "Trish Whetzel" <whetzel at stanford.edu> wrote:
>> 
>> Can you send a list of parameters that your application uses to
>> access the Annotator Web Service, e.g. longestOnly, stopWords, etc.
>> as well as a small example of sample text?
>> 
>> Best regards,
>> Trish
>> 
>> 
>> On Mar 19, 2010, at 8:18 AM, Marin, Marina wrote:
>> 
>> Dear Sir or Madame,
>> 
>> We, at NYU Medical Center have just deployed an application that
>> uses NCBO Annotator Web Service to generate MeSH terms from a
>> medical course goals and objectives.
>> The tool worked great until very recently, when, the Mesh ontology
>> (42142, former 40401) would not produce any results using either
>> http://bioportal.bioontology.org/annotator
>>  or http://rest.bioontology.org/test_oba.html
>> Please, advise.
>> 
>> Thank you.
>> 
>> Marina Marin
>> Senior Applications Programmer
>> Division of Educational Informatics
>> New York University School of Medicine
>> 550 First Avenue, Coles 202
>> New York, NY 10016
>> Tel: (212) 263-2058
>> 
>> 
>> 
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>> _______________________________________________
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>> 
>> 
>> Trish Whetzel, PhD
>> Outreach Coordinator
>> The National Center for Biomedical Ontology
>> Ph: 650-721-2378
>> whetzel at stanford.edu
>> http://www.bioontology.org
>> 
>> 
>> 
>> 
>> 
>> 
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