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[bioontology-support] NPO v. 2010-04-30 for release

Trish Whetzel whetzel at stanford.edu
Mon May 3 07:46:19 PDT 2010


Hi Dennis and Nathan,

Are you able to open the inferred version in Protege 3.4.4? What terms  
in the asserted version have the relationships part_of or has_part?

Trish


On May 3, 2010, at 7:30 AM, Nathan Baker wrote:

> Hi Dennis --
>
> I'm not sure but will Cc Trish for her suggestions.
>
> Thanks,
>
> Nathan
>
> On Mon, May 3, 2010 at 9:23 AM, Dennis Thomas <dgthomas78 at gmail.com>  
> wrote:
>> Hi Nathan,
>>
>> I was just looking at the NPO on BioPortal.  It seems that the  
>> inferred NPO
>> is not showing up on the page.
>> However, I am able to view the asserted NPO.  But, in the asserted  
>> NPO, I am
>> not able to see term-to-term relationships (e.g., part_of,  
>> has_part, etc.)
>> which actually are present in the OWL file.
>>
>> I am thinking this could be a parsing problem and could be because  
>> we have
>> new OWL annotation properties added to support the use of NCI Protege
>> editor.
>>
>> Dennis
>>
>>
>>
>> On Sat, May 1, 2010 at 12:25 PM, Nathan Baker <baker at biochem.wustl.edu 
>> >
>> wrote:
>>>
>>> Uploaded -- thanks!
>>>
>>> On Apr 30, 2010, at 10:25 PM, Dennis Thomas wrote:
>>>
>>>> Hi Nathan,
>>>>
>>>> I've attached the OWL files of the new NPO version (v.  
>>>> 2010-04-30) for
>>>> uploading into BioPortal.  The release notes are available at the  
>>>> project
>>>> website:  http://www.nano-ontology.org/documentation/version-release-notes 
>>>>  .
>>>>
>>>> Thank you,
>>>> Dennis
>>>>
>>>> --
>>>> Dennis G. Thomas, D. Sc.
>>>> Washington University in St. Louis
>>>> Phone (Office): 314-362-1938
>>>> <npo-04-30-2010_asserted.owl><npo-04-30-2010_inferred.owl>
>>>
>>> --
>>> Nathan Baker (http://www.nabgroup.org)
>>> Associate Professor, Dept. of Biochemistry and Molecular Biophysics
>>> Director, Computational and Molecular Biophysics Graduate Program
>>> Center for Computational Biology, Washington University in St. Louis
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>
>>
>>
>> --
>> Dennis G. Thomas, D. Sc.
>> Washington University in St. Louis
>> Phone (Office): 314-362-1938
>>
>
>
>
> -- 
> Nathan Baker (http://www.nabgroup.org)
> Associate Professor, Dept. of Biochemistry and Molecular Biophysics
> Director, Computational and Molecular Biophysics Graduate Program
> Center for Computational Biology, Washington University in St. Louis




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