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[bioontology-support] NEMO BioPortal mappings

Trish Whetzel whetzel at stanford.edu
Wed May 5 17:54:29 PDT 2010


Hi Gwen,

We can upload the mappings so they are available via the mapping Web  
service and BioPortal UI. However, the file format is not entirely  
clear to me. For the term, ConnectedSpatiotemporalRegion, what term is  
it mapped to?

Trish


On May 5, 2010, at 3:40 PM, Gwen Frishkoff wrote:

>
> Dear Trish,
>
> Attached is a list of mappings for NEMO. I manually entered mappings  
> for a handful of concepts with NEMO URI (~35 of these). The reason  
> these have NEMO URI is because the mapping is probably not an  
> identity mapping , so we redefined the concepts in a way that made  
> sense for our specific applications.
>
> Thanks so much for your assistance with this. I hope you don't  
> literally mean that you need to enter these manually. If so, NEMO  
> does have an ontology curator, and I can ask her to do this through  
> BioPortal. But if you have a back-end way to do it more quickly,  
> that would be great.
>
> Thanks again,
> Gwen
>
> Gwen Frishkoff, Ph.D.
> Assistant Professor, Department of Psychology
> Associate Member, Neuroscience Institute
> 140 Decatur Street
> Urban Life, Rm 712
> Georgia State University
> Atlanta, Georgia  30303-3083
>
> Email: gfrishkoff at gsu.edu
> Phone: 404-413-6303
> Fax:   404-413-6218
>
> "A speaker is like a lousy auto mechanic: every time he fixes  
> something in the language, he screws up something else." -- Joseph  
> H. Greenberg
>
> <NEMO_BioPortalMappings_2010May5.xls>

Trish Whetzel, PhD
Outreach Coordinator
The National Center for Biomedical Ontology
Ph: 650-721-2378
whetzel at stanford.edu
http://www.bioontology.org



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