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[bioontology-support] NEMO BioPortal mappings

Trish Whetzel whetzel at stanford.edu
Wed May 5 18:57:50 PDT 2010


Thanks for the update to the file. Can you expand on "the mappings do  
not appear automatically in BioPortal"?

Trish


On May 5, 2010, at 6:46 PM, Gwen Frishkoff wrote:

>
> Sorry, Trish. I've labeled the source and target terms and URI more  
> clearly (I hope). See attached.
>
> Notice that the URI for the term in NEMO and the URI for the term  
> that it maps to are the same. In one sense, this makes the mapping  
> absolutely trivial -- except that the mappings do not appear  
> automatically in BioPortal.
>
> Thanks,
> Gwen
>
> Gwen Frishkoff, Ph.D.
> Assistant Professor, Department of Psychology
> Associate Member, Neuroscience Institute
> 140 Decatur Street
> Urban Life, Rm 712
> Georgia State University
> Atlanta, Georgia  30303-3083
>
> Email: gfrishkoff at gsu.edu
> Phone: 404-413-6303
> Fax:   404-413-6218
>
> "A speaker is like a lousy auto mechanic: every time he fixes  
> something in the language, he screws up something else." -- Joseph  
> H. Greenberg
>
> Trish Whetzel wrote:
>> Hi Gwen,
>> We can upload the mappings so they are available via the mapping  
>> Web service and BioPortal UI. However, the file format is not  
>> entirely clear to me. For the term, ConnectedSpatiotemporalRegion,  
>> what term is it mapped to?
>> Trish
>> On May 5, 2010, at 3:40 PM, Gwen Frishkoff wrote:
>>>
>>> Dear Trish,
>>>
>>> Attached is a list of mappings for NEMO. I manually entered  
>>> mappings for a handful of concepts with NEMO URI (~35 of these).  
>>> The reason these have NEMO URI is because the mapping is probably  
>>> not an identity mapping , so we redefined the concepts in a way  
>>> that made sense for our specific applications.
>>>
>>> Thanks so much for your assistance with this. I hope you don't  
>>> literally mean that you need to enter these manually. If so, NEMO  
>>> does have an ontology curator, and I can ask her to do this  
>>> through BioPortal. But if you have a back-end way to do it more  
>>> quickly, that would be great.
>>>
>>> Thanks again,
>>> Gwen
>>>
>>> Gwen Frishkoff, Ph.D.
>>> Assistant Professor, Department of Psychology
>>> Associate Member, Neuroscience Institute
>>> 140 Decatur Street
>>> Urban Life, Rm 712
>>> Georgia State University
>>> Atlanta, Georgia  30303-3083
>>>
>>> Email: gfrishkoff at gsu.edu
>>> Phone: 404-413-6303
>>> Fax:   404-413-6218
>>>
>>> "A speaker is like a lousy auto mechanic: every time he fixes  
>>> something in the language, he screws up something else." -- Joseph  
>>> H. Greenberg
>>>
>>> <NEMO_BioPortalMappings_2010May5.xls>
>> Trish Whetzel, PhD
>> Outreach Coordinator
>> The National Center for Biomedical Ontology
>> Ph: 650-721-2378
>> whetzel at stanford.edu
>> http://www.bioontology.org
> <NEMO_BioPortalMappings_2010May5v2.xls>




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