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[bioontology-support] reg. bioportal web services

Trish Whetzel whetzel at stanford.edu
Fri May 7 19:10:28 PDT 2010


Yes, the parsing should kick in a little later.  I'll check when I get  
back to a full keyboard later tonite.

Auto-complete works with view and ontology.  The view is a subset of  
an ontology.

Sent from my iPhone

On May 7, 2010, at 6:59 PM, Sridevi Polavaram <spolavar at gmu.edu> wrote:

>
> Hi Trish:
> Thanks for the instructions. I have uploaded the obo file and the  
> status is showing as parsing. Will I be able to use it in the weekend?
>
> Also, I don't understand the difference between the view and the  
> ontology itself? Is creating a view necessary for using the auto- 
> completion feature?
> Thanks for the contact number. My mobile# 571-426-3891
> Thanks
> Sridevi
>
>
> ----- Original Message -----
> From: Trish Whetzel <whetzel at stanford.edu>
> Date: Friday, May 7, 2010 5:17 pm
> Subject: Re: reg.  bioportal web services
>
>> Sure, generally they are the same as loading the view to the stage
>> server.
>> -create an account for BioPortal,
>> http://bioportal.bioontology.org/users/new-go to NCBI taxonomy and
>> click on views,
>> http://bioportal.bioontology.org/ontologies/38802#views-click on
>> 'Create New View' to upload your view
>>
>> You can then use the appropriate ontology identifier or ontology
>> version identifier as needed in your application.
>>
>> Trish
>> Feel free to call if you have any problems - 302-598-8091
>>
>>
>> On May 7, 2010, at 2:12 PM, Sridevi Polavaram wrote:
>>
>>> Sure! Please give me the instructions.
>>> Thanks
>>> Sridevi
>>> Trish Whetzel wrote:
>>>> Hi Sridevi,
>>>>
>>>> Would it be possible to upload the view to the Production
>> BioPortal?>>
>>>> Trish
>>>>
>>>>
>>>> On May 7, 2010, at 3:12 AM, Sridevi Polavaram wrote:
>>>>
>>>>> Hi Trish:
>>>>> It seems like the NCBI_NMO ontology is not on the staging
>> server?
>>>>> I am hoping to show the bioportal web service feature in my
>> demo
>>>>> at a 3-day conference at HHMI Janelia farm next Monday.
>>>>> Is this something we can have fixed!
>>>>> Thanks
>>>>> Sridevi
>>>>>
>>>>> ----- Original Message -----
>>>>> From: Trish Whetzel <whetzel at stanford.edu>
>>>>> Date: Thursday, April 29, 2010 8:52 pm
>>>>> Subject: Re: reg.  bioportal web services
>>>>>
>>>>>> Hi,
>>>>>>
>>>>>> Views do have their own id. See attached.
>>>>>>
>>>>>> Trish
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> On Apr 29, 2010, at 8:06 AM, Sridevi Polavaram wrote:
>>>>>
>>>>>> Hi Trish:
>>>>>> The visualizer seems to be working for the last version that I
>>
>>>>>> had submitted (NCBI_NMOsp_v1.0). But the fill in a field in
>> your
>>>>>> from (auto-completion) feature is not updated according the
>> last
>>>>>> version. The auto-completion feature seems to be working via
>>>>>> ontology ID, which is 1453, but the last version that I had
>>>>>> submitted is shown as a view and doesn't have it's own ID!
>>>>>> Thanks
>>>>>> Sridevi
>>>>>
>>>>
>>>
>>
>>



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